Long-read DNA sequencing: recent advances and remaining challenges
PE Warburton, RP Sebra - Annual review of genomics and …, 2023 - annualreviews.org
DNA sequencing has revolutionized medicine over recent decades. However, analysis of
large structural variation and repetitive DNA, a hallmark of human genomes, has been …
large structural variation and repetitive DNA, a hallmark of human genomes, has been …
Plant genome resequencing and population genomics: Current status and future prospects
Advances in DNA sequencing technology have sparked a genomics revolution, driving
breakthroughs in plant genetics and crop breeding. Recently, the focus has shifted from …
breakthroughs in plant genetics and crop breeding. Recently, the focus has shifted from …
Einkorn genomics sheds light on history of the oldest domesticated wheat
Einkorn (Triticum monococcum) was the first domesticated wheat species, and was central
to the birth of agriculture and the Neolithic Revolution in the Fertile Crescent around 10,000 …
to the birth of agriculture and the Neolithic Revolution in the Fertile Crescent around 10,000 …
Navigating the pitfalls of mapping DNA and RNA modifications
Y Kong, EA Mead, G Fang - Nature Reviews Genetics, 2023 - nature.com
Chemical modifications to nucleic acids occur across the kingdoms of life and carry
important regulatory information. Reliable high-resolution mapping of these modifications is …
important regulatory information. Reliable high-resolution mapping of these modifications is …
Chromosome-scale assembly of the wild wheat relative Aegilops umbellulata
M Abrouk, Y Wang, E Cavalet-Giorsa, M Troukhan… - Scientific Data, 2023 - nature.com
Wild wheat relatives have been explored in plant breeding to increase the genetic diversity
of bread wheat, one of the most important food crops. Aegilops umbellulata is a diploid U …
of bread wheat, one of the most important food crops. Aegilops umbellulata is a diploid U …
Exploring the crop epigenome: a comparison of DNA methylation profiling techniques
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …
Advances in the discovery and analyses of human tandem repeats
MJP Chaisson, A Sulovari… - Emerging topics in …, 2023 - portlandpress.com
Long-read sequencing platforms provide unparalleled access to the structure and
composition of all classes of tandemly repeated DNA from STRs to satellite arrays. This …
composition of all classes of tandemly repeated DNA from STRs to satellite arrays. This …
Assessing the efficacy of target adaptive sampling long-read sequencing through hereditary cancer patient genomes
W Nakamura, M Hirata, S Oda, K Chiba, A Okada… - npj Genomic …, 2024 - nature.com
Innovations in sequencing technology have led to the discovery of novel mutations that
cause inherited diseases. However, many patients with suspected genetic diseases remain …
cause inherited diseases. However, many patients with suspected genetic diseases remain …
A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
Background Long-read sequencing can enable the detection of base modifications, such as
CpG methylation, in single molecules of DNA. The most commonly used methods for long …
CpG methylation, in single molecules of DNA. The most commonly used methods for long …
Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii
S Grewal, C Yang, D Scholefield, S Ashling, S Ghosh… - Scientific Data, 2024 - nature.com
Wheat (Triticum aestivum) is one of the most important food crops with an urgent need for
increase in its production to feed the growing world. Triticum timopheevii (2n= 4x= 28) is an …
increase in its production to feed the growing world. Triticum timopheevii (2n= 4x= 28) is an …