Cytosystems dynamics in self-organization of tissue architecture
Y Sasai - Nature, 2013 - nature.com
Our knowledge of the principles by which organ architecture develops through complex
collective cell behaviours is still limited. Recent work has shown that the shape of such …
collective cell behaviours is still limited. Recent work has shown that the shape of such …
Machine learning in cell biology–teaching computers to recognize phenotypes
C Sommer, DW Gerlich - Journal of cell science, 2013 - journals.biologists.com
Recent advances in microscope automation provide new opportunities for high-throughput
cell biology, such as image-based screening. High-complex image analysis tasks often …
cell biology, such as image-based screening. High-complex image analysis tasks often …
[HTML][HTML] In silico labeling: predicting fluorescent labels in unlabeled images
Microscopy is a central method in life sciences. Many popular methods, such as antibody
labeling, are used to add physical fluorescent labels to specific cellular constituents …
labeling, are used to add physical fluorescent labels to specific cellular constituents …
From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system
E Gultepe, JP Green, H Nguyen… - Journal of the …, 2014 - academic.oup.com
Objective To develop a decision support system to identify patients at high risk for
hyperlactatemia based upon routinely measured vital signs and laboratory studies. Materials …
hyperlactatemia based upon routinely measured vital signs and laboratory studies. Materials …
Accurate cell segmentation in microscopy images using membrane patterns
S Dimopoulos, CE Mayer, F Rudolf, J Stelling - Bioinformatics, 2014 - academic.oup.com
Motivation: Identifying cells in an image (cell segmentation) is essential for quantitative
single-cell biology via optical microscopy. Although a plethora of segmentation methods …
single-cell biology via optical microscopy. Although a plethora of segmentation methods …
Live-cell imaging and analysis reveal cell phenotypic transition dynamics inherently missing in snapshot data
W Wang, D Douglas, J Zhang, S Kumari… - Science …, 2020 - science.org
Recent advances in single-cell techniques catalyze an emerging field of studying how cells
convert from one phenotype to another, in a step-by-step process. Two grand technical …
convert from one phenotype to another, in a step-by-step process. Two grand technical …
A deep learning and novelty detection framework for rapid phenotyping in high-content screening
C Sommer, R Hoefler, M Samwer… - Molecular biology of the …, 2017 - Am Soc Cell Biol
Supervised machine learning is a powerful and widely used method for analyzing high-
content screening data. Despite its accuracy, efficiency, and versatility, supervised machine …
content screening data. Despite its accuracy, efficiency, and versatility, supervised machine …
Single-cell and multivariate approaches in genetic perturbation screens
Large-scale genetic perturbation screens are a classical approach in biology and have been
crucial for many discoveries. New technologies can now provide unbiased quantification of …
crucial for many discoveries. New technologies can now provide unbiased quantification of …
Self-supervised machine learning for live cell imagery segmentation
MC Robitaille, JM Byers, JA Christodoulides… - Communications …, 2022 - nature.com
Segmenting single cells is a necessary process for extracting quantitative data from
biological microscopy imagery. The past decade has seen the advent of machine learning …
biological microscopy imagery. The past decade has seen the advent of machine learning …
Large‐scale image‐based screening and profiling of cellular phenotypes
N Bougen‐Zhukov, SY Loh, HK Lee, LH Loo - Cytometry Part A, 2017 - Wiley Online Library
Cellular phenotypes are observable characteristics of cells resulting from the interactions of
intrinsic and extrinsic chemical or biochemical factors. Image‐based phenotypic screens …
intrinsic and extrinsic chemical or biochemical factors. Image‐based phenotypic screens …