Data integration strategies for whole-cell modeling

K Tummler, E Klipp - FEMS Yeast Research, 2024 - academic.oup.com
Data makes the world go round—and high quality data is a prerequisite for precise models,
especially for whole-cell models (WCM). Data for WCM must be reusable, contain …

A practical guide to bioimaging research data management in core facilities

C Schmidt, T Boissonnet, J Dohle… - Journal of …, 2024 - Wiley Online Library
Bioimage data are generated in diverse research fields throughout the life and biomedical
sciences. Its potential for advancing scientific progress via modern, data‐driven discovery …

[HTML][HTML] Biomedical Data Repository Concepts and Management Principles

D Lin, M McAuliffe, KD Pruitt, A Gururaj, C Melchior… - Scientific Data, 2024 - nature.com
The demand for open data and open science is on the rise, fueled by expectations from the
scientific community, calls to increase transparency and reproducibility in research findings …

[HTML][HTML] The bioinformatics landscape in environmental omics: Lessons from a national ELIXIR survey

A Gioti, D Theodosopoulou, P Bravakos, A Magoulas… - iScience, 2024 - cell.com
As a research infrastructure with a mission to provide services for bioinformatics, ELIXIR
aims to identify and inform its target audiences. Here, we present a survey on a community …

[HTML][HTML] Getting ready for the European Health Data Space (EHDS): IDERHA's plan to align with the latest EHDS requirements for the secondary use of health data

R Hussein, I Balaur, A Burmann… - Open …, 2024 - open-research-europe.ec.europa.eu
Objective The European Health Data Space (EHDS) shapes the digital transformation of
healthcare in Europe. The EHDS regulation will also accelerate the use of health data for …

From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research

Y Gadiya, T Abbassi-Daloii, V Ioannidis, N Juty… - bioRxiv, 2024 - biorxiv.org
While awareness of FAIR (Findable, Accessible, Interoperable, and Reusable) principles
has expanded across diverse domains, there remains a notable absence of impactful …

Maggot: An ecosystem for sharing metadata within the web of FAIR Data

D Jacob, F Ehrenmann, R David, J Tran… - bioRxiv, 2024 - biorxiv.org
Background: Descriptive metadata are crucial for the discovery, reporting and mobilisation of
research datasets. Addressing all metadata issues within the Data Management Plan often …

[PDF][PDF] dPIDs-the Emerging Persistent Identification Technology for FAIR and the Digital Era

A Vukolov, E van Winkle, E Zhdanova, G Kourousias - researchgate.net
This paper presents a comprehensive exploration of an emerging technology focused on the
persistent identification and sharing of data and metadata, termed “decentralised Persistent …