Rational design of multitarget-directed ligands: strategies and emerging paradigms

J Zhou, X Jiang, S He, H Jiang, F Feng… - Journal of medicinal …, 2019 - ACS Publications
Due to the complexity of multifactorial diseases, single-target drugs do not always exhibit
satisfactory efficacy. Recently, increasing evidence indicates that simultaneous modulation …

Rational multitargeted drug design strategy from the perspective of a medicinal chemist

X Li, X Li, F Liu, S Li, D Shi - Journal of Medicinal Chemistry, 2021 - ACS Publications
The development of multitarget-directed ligands (MTDLs) has become a widely focused
research topic, but rational design remains as an enormous challenge. This paper reviews …

Implications of protein flexibility for drug discovery

SJ Teague - Nature reviews Drug discovery, 2003 - nature.com
Proteins are in constant motion between different conformational states with similar
energies. This has often been ignored in drug design. However, protein flexibility is …

Novel method for generating structure-based pharmacophores using energetic analysis

NK Salam, R Nuti, W Sherman - Journal of chemical information …, 2009 - ACS Publications
We describe a novel method to develop energetically optimized, structure-based
pharmacophores for use in rapid in silico screening. The method combines pharmacophore …

In Search of a Novel Anti-HIV Drug:  Multidisciplinary Coordination in the Discovery of 4-[[4-[[4-[(1E)-2-Cyanoethenyl]-2,6-dimethylphenyl]amino]-2- pyrimidinyl] …

PAJ Janssen, PJ Lewi, E Arnold… - Journal of medicinal …, 2005 - ACS Publications
Ideally, an anti-HIV drug should (1) be highly active against wild-type and mutant HIV
without allowing breakthrough;(2) have high oral bioavailability and long elimination half …

HIV‐1 NNRTIs: structural diversity, pharmacophore similarity, and impliations for drug design

P Zhan, X Chen, D Li, Z Fang… - Medicinal research …, 2013 - Wiley Online Library
Nonnucleoside reverse transcriptase inhibitors (NNRTIs) nowadays represent very potent
and most promising anti‐AIDS agents that specifically target the HIV‐1 reverse transcriptase …

Non‐nucleoside reverse transcriptase inhibitors (NNRTIs): past, present, and future

E De Clercq - Chemistry & biodiversity, 2004 - Wiley Online Library
Non‐nucleoside reverse transcriptase (RT) inhibitors (NNRTIs) have become an inherent
ingredient of the drug combination schemes that are currently used in the treatment of …

[HTML][HTML] Structural basis for the resilience of efavirenz (DMP-266) to drug resistance mutations in HIV-1 reverse transcriptase

J Ren, J Milton, KL Weaver, SA Short, DI Stuart… - Structure, 2000 - cell.com
Background: Efavirenz is a second-generation non-nucleoside inhibitor of HIV-1 reverse
transcriptase (RT) that has recently been approved for use against HIV-1 infection …

Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab …

J Ding, K Das, Y Hsiou, SG Sarafianos… - Journal of molecular …, 1998 - Elsevier
The structure of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT)
complexed with a 19-mer/18-mer double-stranded DNA template-primer (dsDNA) and the …

Contribution of conformer focusing to the uncertainty in predicting free energies for protein− ligand binding

J Tirado-Rives, WL Jorgensen - Journal of medicinal chemistry, 2006 - ACS Publications
When a ligand binds to a protein, it is typically not in the lowest-energy conformation for the
unbound ligand and there is also a loss of conformational degrees of freedom. The free …