Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients
EN Baruch, I Youngster, G Ben-Betzalel, R Ortenberg… - Science, 2021 - science.org
The gut microbiome has been shown to influence the response of tumors to anti–PD-1
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
The cell type specific sequences of transcriptional programs during lung regeneration have
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model …
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model …
[HTML][HTML] IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression
A Sadik, LFS Patterson, S Öztürk, SR Mohapatra… - Cell, 2020 - cell.com
Aryl hydrocarbon receptor (AHR) activation by tryptophan (Trp) catabolites enhances tumor
malignancy and suppresses anti-tumor immunity. The context specificity of AHR target …
malignancy and suppresses anti-tumor immunity. The context specificity of AHR target …
Neurotrophin signalling in the human nervous system
S Ateaque, S Merkouris, YA Barde - Frontiers in molecular …, 2023 - frontiersin.org
This review focuses on neurotrophins and their tyrosine kinase receptors, with an emphasis
on their relevance to the function and dysfunction in the human nervous system. It also deals …
on their relevance to the function and dysfunction in the human nervous system. It also deals …
Three differential expression analysis methods for RNA sequencing: limma, EdgeR, DESeq2
S Liu, Z Wang, R Zhu, F Wang, Y Cheng… - JoVE (Journal of Visualized …, 2021 - jove.com
RNA sequencing (RNA-seq) is one of the most widely used technologies in transcriptomics
as it can reveal the relationship between the genetic alteration and complex biological …
as it can reveal the relationship between the genetic alteration and complex biological …
[HTML][HTML] Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Human brain development is underpinned by cellular and molecular reconfigurations
continuing into the third decade of life. To reveal cell dynamics orchestrating neural …
continuing into the third decade of life. To reveal cell dynamics orchestrating neural …
[HTML][HTML] Shared and distinct transcriptomic cell types across neocortical areas
The neocortex contains a multitude of cell types that are segregated into layers and
functionally distinct areas. To investigate the diversity of cell types across the mouse …
functionally distinct areas. To investigate the diversity of cell types across the mouse …
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
Potato is the most widely produced tuber crop worldwide. However, reconstructing the four
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …
Organism-wide, cell-type-specific secretome mapping of exercise training in mice
There is a significant interest in identifying blood-borne factors that mediate tissue crosstalk
and function as molecular effectors of physical activity. Although past studies have focused …
and function as molecular effectors of physical activity. Although past studies have focused …
Genomic reaction norms inform predictions of plastic and adaptive responses to climate change
RA Oomen, JA Hutchings - Journal of Animal Ecology, 2022 - Wiley Online Library
Genomic reaction norms represent the range of gene expression phenotypes (usually
mRNA transcript levels) expressed by a genotype along an environmental gradient …
mRNA transcript levels) expressed by a genotype along an environmental gradient …