Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients

EN Baruch, I Youngster, G Ben-Betzalel, R Ortenberg… - Science, 2021 - science.org
The gut microbiome has been shown to influence the response of tumors to anti–PD-1
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis

M Strunz, LM Simon, M Ansari, JJ Kathiriya… - Nature …, 2020 - nature.com
The cell type specific sequences of transcriptional programs during lung regeneration have
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model …

[HTML][HTML] IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression

A Sadik, LFS Patterson, S Öztürk, SR Mohapatra… - Cell, 2020 - cell.com
Aryl hydrocarbon receptor (AHR) activation by tryptophan (Trp) catabolites enhances tumor
malignancy and suppresses anti-tumor immunity. The context specificity of AHR target …

Neurotrophin signalling in the human nervous system

S Ateaque, S Merkouris, YA Barde - Frontiers in molecular …, 2023 - frontiersin.org
This review focuses on neurotrophins and their tyrosine kinase receptors, with an emphasis
on their relevance to the function and dysfunction in the human nervous system. It also deals …

Three differential expression analysis methods for RNA sequencing: limma, EdgeR, DESeq2

S Liu, Z Wang, R Zhu, F Wang, Y Cheng… - JoVE (Journal of Visualized …, 2021 - jove.com
RNA sequencing (RNA-seq) is one of the most widely used technologies in transcriptomics
as it can reveal the relationship between the genetic alteration and complex biological …

[HTML][HTML] Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution

CA Herring, RK Simmons, S Freytag, D Poppe… - Cell, 2022 - cell.com
Human brain development is underpinned by cellular and molecular reconfigurations
continuing into the third decade of life. To reveal cell dynamics orchestrating neural …

[HTML][HTML] Shared and distinct transcriptomic cell types across neocortical areas

B Tasic, Z Yao, LT Graybuck, KA Smith, TN Nguyen… - Nature, 2018 - nature.com
The neocortex contains a multitude of cell types that are segregated into layers and
functionally distinct areas. To investigate the diversity of cell types across the mouse …

Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar

H Sun, WB Jiao, K Krause, JA Campoy, M Goel… - Nature …, 2022 - nature.com
Potato is the most widely produced tuber crop worldwide. However, reconstructing the four
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …

Organism-wide, cell-type-specific secretome mapping of exercise training in mice

W Wei, NM Riley, X Lyu, X Shen, J Guo, SH Raun… - Cell Metabolism, 2023 - cell.com
There is a significant interest in identifying blood-borne factors that mediate tissue crosstalk
and function as molecular effectors of physical activity. Although past studies have focused …

Genomic reaction norms inform predictions of plastic and adaptive responses to climate change

RA Oomen, JA Hutchings - Journal of Animal Ecology, 2022 - Wiley Online Library
Genomic reaction norms represent the range of gene expression phenotypes (usually
mRNA transcript levels) expressed by a genotype along an environmental gradient …