A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions

TN Jarada, JG Rokne, R Alhajj - Journal of cheminformatics, 2020 - Springer
Drug repositioning is the process of identifying novel therapeutic potentials for existing drugs
and discovering therapies for untreated diseases. Drug repositioning, therefore, plays an …

Leveraging big data analytics in healthcare enhancement: trends, challenges and opportunities

A Rehman, S Naz, I Razzak - Multimedia Systems, 2022 - Springer
Clinical decisions are more promising and evidence-based, hence, big data analytics to
assist clinical decision-making has been expressed for a variety of clinical fields. Due to the …

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental …

SK Burley, C Bhikadiya, C Bi, S Bittrich… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), the US data center for the global PDB archive and a founding member of the …

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

SK Burley, HM Berman, C Bhikadiya, C Bi… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB, rcsb. org), the US data center for the global PDB archive, serves thousands of Data …

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

C Knox, V Law, T Jewison, P Liu, S Ly… - Nucleic acids …, 2010 - academic.oup.com
Abstract DrugBank (http://www. drugbank. ca) is a richly annotated database of drug and
drug target information. It contains extensive data on the nomenclature, ontology, chemistry …

Statistical potential for assessment and prediction of protein structures

M Shen, A Sali - Protein science, 2006 - Wiley Online Library
Protein structures in the Protein Data Bank provide a wealth of data about the interactions
that determine the native states of proteins. Using the probability theory, we derive an atomic …

UniRef: comprehensive and non-redundant UniProt reference clusters

BE Suzek, H Huang, P McGarvey, R Mazumder… - …, 2007 - academic.oup.com
Motivation: Redundant protein sequences in biological databases hinder sequence
similarity searches and make interpretation of search results difficult. Clustering of protein …

Database resources of the national center for biotechnology information

DL Wheeler, T Barrett, DA Benson… - Nucleic acids …, 2007 - academic.oup.com
In addition to maintaining the GenBank (R) nucleic acid sequence database, the National
Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for …

Prediction of protein solubility based on sequence physicochemical patterns and distributed representation information with DeepSoluE

C Wang, Q Zou - BMC biology, 2023 - Springer
Background Protein solubility is a precondition for efficient heterologous protein expression
at the basis of most industrial applications and for functional interpretation in basic research …

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

H Berman, K Henrick, H Nakamura… - Nucleic acids …, 2007 - academic.oup.com
Abstract The worldwide Protein Data Bank (wwPDB) is the international collaboration that
manages the deposition, processing and distribution of the PDB archive. The online PDB …