The newest Oxford Nanopore R10. 4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling

T Zhang, H Li, S Ma, J Cao, H Liao… - Applied and …, 2023 - Am Soc Microbiol
The long-read amplicon provides a species-level solution for the community. With the
improvement of nanopore flowcells, the accuracy of Oxford Nanopore Technologies (ONT) …

[HTML][HTML] Exploring cereal metagenomics: unravelling microbial communities for improved food security

K Masenya, MC Manganyi, TB Dikobe - Microorganisms, 2024 - mdpi.com
Food security is an urgent global challenge, with cereals playing a crucial role in meeting
the nutritional requirements of populations worldwide. In recent years, the field of …

Effects of ammonia nitrogen and organic carbon availability on microbial community structure and ecological interactions in a full-scale partial nitritation and anammox …

L Yang, H Yao, F Jia, B Han, Y Chen, J Jiang, T Liu… - Water Research, 2023 - Elsevier
Nutrient availability significantly impacts microbial biosynthesis, cell growth, and cell cycle
progression. In this study, a full-scale plug-flow partial nitritation/anammox (PN/A) system …

[HTML][HTML] Enhancing Clinical Utility: Utilization of International Standards and Guidelines for Metagenomic Sequencing in Infectious Disease Diagnosis

CM Kan, HF Tsang, XM Pei, SSM Ng, AKY Yim… - International Journal of …, 2024 - mdpi.com
Metagenomic sequencing has emerged as a transformative tool in infectious disease
diagnosis, offering a comprehensive and unbiased approach to pathogen detection …

Core taxa drive microeukaryotic community stability of a deep subtropical reservoir after complete mixing

Y Xue, H Chen, P Xiao, L Jin… - Environmental …, 2023 - Wiley Online Library
Microeukaryotes are key for predicting the change of ecosystem processes in the face of a
disturbance. However, their vertical responses to multiple interconnected factors caused by …

Climatic factors regulate the assembly processes of abundant and rare microbial communities in desert soil

Q Sun, HY Li, K Li, XQ Zhang, YB Shi… - Journal of Plant …, 2023 - academic.oup.com
Soil microorganisms, which include many rare taxa and a small number of abundant taxa,
have different contributions to the ecosystem functions and services. High throughput …

YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample

D Koslicki, S White, C Ma, A Novikov - Bioinformatics, 2024 - academic.oup.com
Motivation In metagenomics, the study of environmentally associated microbial communities
from their sampled DNA, one of the most fundamental computational tasks is that of …

Wastewater Deterministically Impacts the Composition and Assembly of Planktonic Microorganisms in the River Ecosystem

Y Zhang, Y Huo, Z Zhang, W Fan, J Zhao, Z Hou… - ACS ES&T …, 2024 - ACS Publications
Bacteria and microeukaryotes inhabiting urban freshwater are susceptible to environmental
disturbance, particularly effluents from wastewater treatment plants (WWTPs). However, how …

[HTML][HTML] Testing the passive sampling hypothesis: The role of dispersal in shaping microbial species-area relationship

W Deng, GB Yu, XY Yang, W Xiao - Frontiers in Microbiology, 2023 - frontiersin.org
Dispersal is one of the key processes determining biodiversity. The passive sampling
hypothesis, which emphasizes dispersal processes, suggests that larger habitats receive …

[HTML][HTML] DNA metabarcoding on repeat: Sequencing data of marine macrobenthos are reproducible and robust across labs and protocols

L Van den Bulcke, A De Backer, J Wittoeck… - Ecological …, 2023 - Elsevier
DNA metabarcoding can be used in marine environmental monitoring if results are
reproducible between labs and robust against modifications to the lab protocol. In this …