A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction

S Mei, F Li, A Leier, TT Marquez-Lago… - Briefings in …, 2020 - academic.oup.com
Human leukocyte antigen class I (HLA-I) molecules are encoded by major histocompatibility
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …

Escape from recognition of SARS-CoV-2 variant spike epitopes but overall preservation of T cell immunity

C Riou, R Keeton, T Moyo-Gwete… - Science translational …, 2021 - science.org
SARS-CoV-2 variants that escape neutralization and potentially affect vaccine efficacy have
emerged. T cell responses play a role in protection from reinfection and severe disease, but …

Mass cytometry: a powerful tool for dissecting the immune landscape

Y Simoni, MHY Chng, S Li, M Fehlings… - Current opinion in …, 2018 - Elsevier
Highlights•Mass cytometry's niche within cutting edge single cell analysis
methods.•Unbiased analysis of lymphoid and myeloid immune cell diversity.•Simultaneous …

Evaluation of cellular immune response to adeno-associated virus-based gene therapy

B Gorovits, M Azadeh, G Buchlis, M Fiscella… - The AAPS journal, 2023 - Springer
The number of approved or investigational late phase viral vector gene therapies (GTx) has
been rapidly growing. The adeno-associated virus vector (AAV) technology continues to be …

Broadly recognized, cross-reactive SARS-CoV-2 CD4 T cell epitopes are highly conserved across human coronaviruses and presented by common HLA alleles

A Becerra-Artiles, JM Calvo-Calle, PP Nanaware… - Cell Reports, 2022 - cell.com
Sequence homology between SARS-CoV-2 and common-cold human coronaviruses
(HCoVs) raises the possibility that memory responses to prior HCoV infection can affect T …

Trivalent mosaic or consensus HIV immunogens prime humoral and broader cellular immune responses in adults

KW Cohen, A Fiore-Gartland, SR Walsh… - The Journal of …, 2023 - Am Soc Clin Investig
BACKGROUND Mosaic and consensus HIV-1 immunogens provide two distinct approaches
to elicit greater breadth of coverage against globally circulating HIV-1 and have shown …

Targeting Protein–Protein Interfaces with Peptides: The Contribution of Chemical Combinatorial Peptide Library Approaches

A Monti, L Vitagliano, A Caporale, M Ruvo… - International journal of …, 2023 - mdpi.com
Protein–protein interfaces play fundamental roles in the molecular mechanisms underlying
pathophysiological pathways and are important targets for the design of compounds of …

HLA-E–restricted HIV-1–specific CD8+ T cell responses in natural infection

A Bansal, MN Gehre, K Qin, S Sterrett… - The Journal of …, 2021 - Am Soc Clin Investig
CD8+ T cell responses restricted by MHC-E, a nonclassical MHC molecule, have been
associated with protection in an SIV/rhesus macaque model. The biological relevance of …

CD8+ T cells responding to the middle east respiratory syndrome coronavirus nucleocapsid protein delivered by vaccinia virus MVA in mice

S Veit, S Jany, R Fux, G Sutter, A Volz - Viruses, 2018 - mdpi.com
Middle East respiratory syndrome coronavirus (MERS-CoV), a novel infectious agent
causing severe respiratory disease and death in humans, was first described in 2012 …

The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration

C Wang, Y Chao, G Matera, Q Gao… - Nucleic Acids …, 2020 - academic.oup.com
Small noncoding RNAs (sRNAs) from mRNA 3′ UTRs seem to present a previously
unrecognized layer of bacterial post-transcriptional control whereby mRNAs influence each …