Bacteria and archaea on Earth and their abundance in biofilms

HC Flemming, S Wuertz - Nature Reviews Microbiology, 2019 - nature.com
Biofilms are a form of collective life with emergent properties that confer many advantages
on their inhabitants, and they represent a much higher level of organization than single cells …

Environmental factors influencing the development and spread of antibiotic resistance

J Bengtsson-Palme, E Kristiansson… - FEMS microbiology …, 2018 - academic.oup.com
Antibiotic resistance and its wider implications present us with a growing healthcare crisis.
Recent research points to the environment as an important component for the transmission …

Microbial surface colonization and biofilm development in marine environments

H Dang, CR Lovell - Microbiology and molecular biology reviews, 2016 - Am Soc Microbiol
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms.
Surface colonization and subsequent biofilm formation and development provide numerous …

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

C Pal, J Bengtsson-Palme, E Kristiansson… - BMC genomics, 2015 - Springer
Background Antibacterial biocides and metals can co-select for antibiotic resistance when
bacteria harbour resistance or tolerance genes towards both types of compounds. Despite …

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

A Klindworth, E Pruesse, T Schweer… - Nucleic acids …, 2013 - academic.oup.com
Abstract 16S ribosomal RNA gene (rDNA) amplicon analysis remains the standard
approach for the cultivation-independent investigation of microbial diversity. The accuracy of …

Ecology of marine Bacteroidetes: a comparative genomics approach

B Fernández-Gómez, M Richter, M Schüler… - The ISME …, 2013 - academic.oup.com
Bacteroidetes are commonly assumed to be specialized in degrading high molecular weight
(HMW) compounds and to have a preference for growth attached to particles, surfaces or …

Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify …

H Mori, F Maruyama, H Kato, A Toyoda… - DNA …, 2014 - academic.oup.com
The deep sequencing of 16S rRNA genes amplified by universal primers has revolutionized
our understanding of microbial communities by allowing the characterization of the diversity …

Marine microbes see a sea of gradients

R Stocker - science, 2012 - science.org
Marine bacteria influence Earth's environmental dynamics in fundamental ways by
controlling the biogeochemistry and productivity of the oceans. These large-scale …

Environmental parameters associated with incidence and transmission of pathogenic Vibrio spp.

KD Brumfield, M Usmani, KM Chen… - Environmental …, 2021 - Wiley Online Library
Vibrio spp. thrive in warm water and moderate salinity, and they are associated with aquatic
invertebrates, notably crustaceans and zooplankton. At least 12 Vibrio spp. are known to …

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

OU Mason, TC Hazen, S Borglin, PSG Chain… - The ISME …, 2012 - academic.oup.com
Abstract The Deepwater Horizon oil spill in the Gulf of Mexico resulted in a deep-sea
hydrocarbon plume that caused a shift in the indigenous microbial community composition …