[HTML][HTML] Transformers in medical image analysis

K He, C Gan, Z Li, I Rekik, Z Yin, W Ji, Y Gao, Q Wang… - Intelligent …, 2023 - Elsevier
Transformers have dominated the field of natural language processing and have recently
made an impact in the area of computer vision. In the field of medical image analysis …

Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives

J Li, J Chen, Y Tang, C Wang, BA Landman… - Medical image …, 2023 - Elsevier
Transformer, one of the latest technological advances of deep learning, has gained
prevalence in natural language processing or computer vision. Since medical imaging bear …

Brain network transformer

X Kan, W Dai, H Cui, Z Zhang… - Advances in Neural …, 2022 - proceedings.neurips.cc
Human brains are commonly modeled as networks of Regions of Interest (ROIs) and their
connections for the understanding of brain functions and mental disorders. Recently …

A survey on graph neural networks and graph transformers in computer vision: A task-oriented perspective

C Chen, Y Wu, Q Dai, HY Zhou, M Xu… - … on Pattern Analysis …, 2024 - ieeexplore.ieee.org
Graph Neural Networks (GNNs) have gained momentum in graph representation learning
and boosted the state of the art in a variety of areas, such as data mining (eg, social network …

Graph-guided network for irregularly sampled multivariate time series

X Zhang, M Zeman, T Tsiligkaridis, M Zitnik - arXiv preprint arXiv …, 2021 - arxiv.org
In many domains, including healthcare, biology, and climate science, time series are
irregularly sampled with varying time intervals between successive readouts and different …

Graph pooling for graph neural networks: Progress, challenges, and opportunities

C Liu, Y Zhan, J Wu, C Li, B Du, W Hu, T Liu… - arXiv preprint arXiv …, 2022 - arxiv.org
Graph neural networks have emerged as a leading architecture for many graph-level tasks,
such as graph classification and graph generation. As an essential component of the …

Dreamr: Diffusion-driven counterfactual explanation for functional mri

HA Bedel, T Çukur - IEEE Transactions on Medical Imaging, 2024 - ieeexplore.ieee.org
Deep learning analyses have offered sensitivity leaps in detection of cognition-related
variables from functional MRI (fMRI) measurements of brain responses. Yet, as deep models …

A-GCL: Adversarial graph contrastive learning for fMRI analysis to diagnose neurodevelopmental disorders

S Zhang, X Chen, X Shen, B Ren, Z Yu, H Yang… - Medical Image …, 2023 - Elsevier
Accurate diagnosis of neurodevelopmental disorders is a challenging task due to the time-
consuming cognitive tests and potential human bias in clinics. To address this challenge, we …

Swift: Swin 4d fmri transformer

P Kim, J Kwon, S Joo, S Bae, D Lee… - Advances in …, 2023 - proceedings.neurips.cc
Modeling spatiotemporal brain dynamics from high-dimensional data, such as functional
Magnetic Resonance Imaging (fMRI), is a formidable task in neuroscience. Existing …

BolT: Fused window transformers for fMRI time series analysis

HA Bedel, I Sivgin, O Dalmaz, SUH Dar, T Çukur - Medical image analysis, 2023 - Elsevier
Deep-learning models have enabled performance leaps in analysis of high-dimensional
functional MRI (fMRI) data. Yet, many previous methods are suboptimally sensitive for …