[HTML][HTML] clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng… - The innovation, 2021 - cell.com
Functional enrichment analysis is pivotal for interpreting high-throughput omics data in life
science. It is crucial for this type of tool to use the latest annotation databases for as many …
science. It is crucial for this type of tool to use the latest annotation databases for as many …
A network model for angiogenesis in ovarian cancer
Background We recently identified two robust ovarian cancer subtypes, defined by the
expression of genes involved in angiogenesis, with significant differences in clinical …
expression of genes involved in angiogenesis, with significant differences in clinical …
Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells
KS Anufrieva, VО Shender, GP Arapidi, MS Pavlyukov… - Genome Medicine, 2018 - Springer
Background Abnormal pre-mRNA splicing regulation is common in cancer, but the effects of
chemotherapy on this process remain unclear. Methods To evaluate the effect of …
chemotherapy on this process remain unclear. Methods To evaluate the effect of …
Sequential interferon β-cisplatin treatment enhances the surface exposure of calreticulin in cancer cells via an interferon regulatory factor 1-dependent manner
Immunogenic cell death (ICD) refers to a unique form of cell death that activates an adaptive
immune response against dead-cell-associated antigens. Accumulating evidence indicates …
immune response against dead-cell-associated antigens. Accumulating evidence indicates …
Characterization of Pt-, Pd-spermine complexes for their effect on polyamine pathway and cisplatin resistance in A2780 ovarian carcinoma cells
R Tummala, P Diegelman, SM Fiuza… - Oncology …, 2010 - spandidos-publications.com
We have previously showed that platinum drugs up-regulate SSAT and SMO and down-
regulate ODC and SAMDC in the polyamine pathway. Several studies including our own …
regulate ODC and SAMDC in the polyamine pathway. Several studies including our own …
Blood prognostic biomarker signatures for hemorrhagic cerebral cavernous malformations (CCMs)
Abstract Background Cerebral cavernous malformations (CCMs) is a neurological disorder
that causes enlarged intracranial capillaries in the brain, leading to an increased risk of …
that causes enlarged intracranial capillaries in the brain, leading to an increased risk of …
Circulating Blood Prognostic Biomarker Signatures for Hemorrhagic Cerebral Cavernous Malformations (CCMs)
Cerebral cavernous malformations (CCMs) are a neurological disorder characterized by
enlarged intracranial capillaries in the brain, increasing the susceptibility to hemorrhagic …
enlarged intracranial capillaries in the brain, increasing the susceptibility to hemorrhagic …
Transcriptional profiling of the dose response: a more powerful approach for characterizing drug activities
RR Ji, H de Silva, Y Jin, RE Bruccoleri… - PLoS computational …, 2009 - journals.plos.org
The dose response curve is the gold standard for measuring the effect of a drug treatment,
but is rarely used in genomic scale transcriptional profiling due to perceived obstacles of …
but is rarely used in genomic scale transcriptional profiling due to perceived obstacles of …
Pathway Distiller-multisource biological pathway consolidation
MS Doderer, Z Anguiano, U Suresh, R Dashnamoorthy… - BMC genomics, 2012 - Springer
Background One method to understand and evaluate an experiment that produces a large
set of genes, such as a gene expression microarray analysis, is to identify …
set of genes, such as a gene expression microarray analysis, is to identify …
Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes
A Zollanvari, MJ Cunningham, U Braga-Neto… - Bmc Bioinformatics, 2009 - Springer
Background Nanomaterials are being manufactured on a commercial scale for use in
medical, diagnostic, energy, component and communications industries. However, concerns …
medical, diagnostic, energy, component and communications industries. However, concerns …