Deep learning-enabled virtual histological staining of biological samples

B Bai, X Yang, Y Li, Y Zhang, N Pillar… - Light: Science & …, 2023 - nature.com
Histological staining is the gold standard for tissue examination in clinical pathology and life-
science research, which visualizes the tissue and cellular structures using chromatic dyes or …

Spatial mapping of cellular senescence: emerging challenges and opportunities

AU Gurkar, AA Gerencser, AL Mora, AC Nelson… - Nature aging, 2023 - nature.com
Cellular senescence is a well-established driver of aging and age-related diseases. There
are many challenges to mapping senescent cells in tissues such as the absence of specific …

Prostate cancer risk stratification via nondestructive 3D pathology with deep learning–assisted gland analysis

W Xie, NP Reder, C Koyuncu, P Leo, S Hawley… - Cancer research, 2022 - AACR
Prostate cancer treatment planning is largely dependent upon examination of core-needle
biopsies. The microscopic architecture of the prostate glands forms the basis for prognostic …

Deep learning-inferred multiplex immunofluorescence for immunohistochemical image quantification

P Ghahremani, Y Li, A Kaufman, R Vanguri… - Nature machine …, 2022 - nature.com
Reporting biomarkers assessed by routine immunohistochemical (IHC) staining of tissue is
broadly used in diagnostic pathology laboratories for patient care. So far, however, clinical …

Generative adversarial networks in digital histopathology: current applications, limitations, ethical considerations, and future directions

SA Alajaji, ZH Khoury, M Elgharib, M Saeed… - Modern Pathology, 2024 - Elsevier
Generative adversarial networks (GANs) have gained significant attention in the field of
image synthesis, particularly in computer vision. GANs consist of a generative model and a …

MYC deregulation and PTEN loss model Tumor and stromal heterogeneity of aggressive triple-negative Breast Cancer

ZO Doha, X Wang, NL Calistri, J Eng, CJ Daniel… - Nature …, 2023 - nature.com
Triple-negative breast cancer (TNBC) patients have a poor prognosis and few treatment
options. Mouse models of TNBC are important for development of new therapies, however …

Defining precancer: a grand challenge for the cancer community

J Faupel-Badger, I Kohaar, M Bahl, AT Chan… - Nature Reviews …, 2024 - nature.com
The term 'precancer'typically refers to an early stage of neoplastic development that is
distinguishable from normal tissue owing to molecular and phenotypic alterations, resulting …

[HTML][HTML] The ACROBAT 2022 challenge: automatic registration of breast cancer tissue

P Weitz, M Valkonen, L Solorzano, C Carr… - Medical image …, 2024 - Elsevier
The alignment of tissue between histopathological whole-slide-images (WSI) is crucial for
research and clinical applications. Advances in computing, deep learning, and availability of …

The utility of unsupervised machine learning in anatomic pathology

ED McAlpine, P Michelow, T Celik - American Journal of Clinical …, 2022 - academic.oup.com
Objectives Developing accurate supervised machine learning algorithms is hampered by
the lack of representative annotated datasets. Most data in anatomic pathology are …

[HTML][HTML] Improving unsupervised stain-to-stain translation using self-supervision and meta-learning

N Bouteldja, BM Klinkhammer, T Schlaich… - Journal of Pathology …, 2022 - Elsevier
Background In digital pathology, many image analysis tasks are challenged by the need for
large and time-consuming manual data annotations to cope with various sources of …