Demographic history, selection and functional diversity of the canine genome
The domestic dog represents one of the most dramatic long-term evolutionary experiments
undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in …
undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in …
[HTML][HTML] Spontaneous dog osteoarthritis—a One Medicine vision
RL Meeson, RJ Todhunter, G Blunn, G Nuki… - Nature Reviews …, 2019 - nature.com
Osteoarthritis (OA) is a global disease that, despite extensive research, has limited treatment
options. Pet dogs share both an environment and lifestyle attributes with their owners, and a …
options. Pet dogs share both an environment and lifestyle attributes with their owners, and a …
Ancestry-inclusive dog genomics challenges popular breed stereotypes
Behavioral genetics in dogs has focused on modern breeds, which are isolated subgroups
with distinctive physical and, purportedly, behavioral characteristics. We interrogated breed …
with distinctive physical and, purportedly, behavioral characteristics. We interrogated breed …
[HTML][HTML] Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology
J Plassais, J Kim, BW Davis, DM Karyadi… - Nature …, 2019 - nature.com
Domestic dog breeds are characterized by an unrivaled diversity of morphologic traits and
breed-associated behaviors resulting from human selective pressures. To identify the …
breed-associated behaviors resulting from human selective pressures. To identify the …
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
Stature is affected by many polymorphisms of small effect in humans. In contrast, variation in
dogs, even within breeds, has been suggested to be largely due to variants in a small …
dogs, even within breeds, has been suggested to be largely due to variants in a small …
[HTML][HTML] Genomic analyses reveal the influence of geographic origin, migration, and hybridization on modern dog breed development
There are nearly 400 modern domestic dog breeds with a unique histories and genetic
profiles. To track the genetic signatures of breed development, we have assembled the most …
profiles. To track the genetic signatures of breed development, we have assembled the most …
Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr
Motivation Genome-wide datasets produced for association studies have dramatically
increased in size over the past few years, with modern datasets commonly including millions …
increased in size over the past few years, with modern datasets commonly including millions …
Performing highly efficient genome scans for local adaptation with R package pcadapt version 4
F Privé, K Luu, BJ Vilhjálmsson… - Molecular Biology and …, 2020 - academic.oup.com
R package pcadapt is a user-friendly R package for performing genome scans for local
adaptation. Here, we present version 4 of pcadapt which substantially improves …
adaptation. Here, we present version 4 of pcadapt which substantially improves …
[PDF][PDF] Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression, and agronomically important loci
FH Lv, YH Cao, GJ Liu, LY Luo, R Lu… - Molecular biology …, 2022 - academic.oup.com
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the
backbone of molecular breeding, but their genome landscapes remain understudied. Here …
backbone of molecular breeding, but their genome landscapes remain understudied. Here …
DNA methylation clocks for dogs and humans
DNA methylation profiles have been used to develop biomarkers of aging known as
epigenetic clocks, which predict chronological age with remarkable accuracy and show …
epigenetic clocks, which predict chronological age with remarkable accuracy and show …