Demographic history, selection and functional diversity of the canine genome

EA Ostrander, RK Wayne, AH Freedman… - Nature Reviews …, 2017 - nature.com
The domestic dog represents one of the most dramatic long-term evolutionary experiments
undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in …

[HTML][HTML] Spontaneous dog osteoarthritis—a One Medicine vision

RL Meeson, RJ Todhunter, G Blunn, G Nuki… - Nature Reviews …, 2019 - nature.com
Osteoarthritis (OA) is a global disease that, despite extensive research, has limited treatment
options. Pet dogs share both an environment and lifestyle attributes with their owners, and a …

Ancestry-inclusive dog genomics challenges popular breed stereotypes

K Morrill, J Hekman, X Li, J McClure, B Logan… - Science, 2022 - science.org
Behavioral genetics in dogs has focused on modern breeds, which are isolated subgroups
with distinctive physical and, purportedly, behavioral characteristics. We interrogated breed …

[HTML][HTML] Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology

J Plassais, J Kim, BW Davis, DM Karyadi… - Nature …, 2019 - nature.com
Domestic dog breeds are characterized by an unrivaled diversity of morphologic traits and
breed-associated behaviors resulting from human selective pressures. To identify the …

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

AC Bouwman, HD Daetwyler, AJ Chamberlain… - Nature …, 2018 - nature.com
Stature is affected by many polymorphisms of small effect in humans. In contrast, variation in
dogs, even within breeds, has been suggested to be largely due to variants in a small …

[HTML][HTML] Genomic analyses reveal the influence of geographic origin, migration, and hybridization on modern dog breed development

HG Parker, DL Dreger, M Rimbault, BW Davis… - Cell reports, 2017 - cell.com
There are nearly 400 modern domestic dog breeds with a unique histories and genetic
profiles. To track the genetic signatures of breed development, we have assembled the most …

Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr

F Privé, H Aschard, A Ziyatdinov, MGB Blum - Bioinformatics, 2018 - academic.oup.com
Motivation Genome-wide datasets produced for association studies have dramatically
increased in size over the past few years, with modern datasets commonly including millions …

Performing highly efficient genome scans for local adaptation with R package pcadapt version 4

F Privé, K Luu, BJ Vilhjálmsson… - Molecular Biology and …, 2020 - academic.oup.com
R package pcadapt is a user-friendly R package for performing genome scans for local
adaptation. Here, we present version 4 of pcadapt which substantially improves …

[PDF][PDF] Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression, and agronomically important loci

FH Lv, YH Cao, GJ Liu, LY Luo, R Lu… - Molecular biology …, 2022 - academic.oup.com
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the
backbone of molecular breeding, but their genome landscapes remain understudied. Here …

DNA methylation clocks for dogs and humans

S Horvath, AT Lu, A Haghani… - Proceedings of the …, 2022 - National Acad Sciences
DNA methylation profiles have been used to develop biomarkers of aging known as
epigenetic clocks, which predict chronological age with remarkable accuracy and show …