Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Retrograde signaling in plants: A critical review focusing on the GUN pathway and beyond

AS Richter, T Nägele, B Grimm, K Kaufmann… - Plant …, 2023 - cell.com
Plastids communicate their developmental and physiological status to the nucleus via
retrograde signaling, allowing nuclear gene expression to be adjusted appropriately …

Proximity labeling in plants

SL Xu, R Shrestha, SS Karunadasa… - Annual review of plant …, 2023 - annualreviews.org
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …

Keep in contact: multiple roles of endoplasmic reticulum–membrane contact sites and the organelle interaction network in plants

P Wang, P Duckney, E Gao, PJ Hussey… - New …, 2023 - Wiley Online Library
Functional regulation and structural maintenance of the different organelles in plants
contribute directly to plant development, reproduction and stress responses. To ensure …

Application of machine learning in spatial proteomics

M Mou, Z Pan, M Lu, H Sun, Y Wang… - Journal of Chemical …, 2022 - ACS Publications
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …

GBPL3 localizes to the nuclear pore complex and functionally connects the nuclear basket with the nucleoskeleton in plants

Y Tang, MI Ho, BH Kang, Y Gu - PLoS biology, 2022 - journals.plos.org
The nuclear basket (NB) is an essential structure of the nuclear pore complex (NPC) and
serves as a dynamic and multifunctional platform that participates in various critical nuclear …

A glossary of plant cell structures: current insights and future questions

BH Kang, CT Anderson, S Arimura, E Bayer… - The Plant …, 2022 - academic.oup.com
In this glossary of plant cell structures, we asked experts to summarize a present-day view of
plant organelles and structures, including a discussion of outstanding questions. In the …

Proximity labeling: an emerging tool for probing in planta molecular interactions

X Yang, Z Wen, D Zhang, Z Li, D Li, U Nagalakshmi… - Plant …, 2021 - cell.com
Protein–protein interaction (PPI) networks are key to nearly all aspects of cellular activity.
Therefore, the identification of PPIs is important for understanding a specific biological …

Proximity labeling proteomics reveals critical regulators for inner nuclear membrane protein degradation in plants

A Huang, Y Tang, X Shi, M Jia, J Zhu, X Yan… - Nature …, 2020 - nature.com
The inner nuclear membrane (INM) selectively accumulates proteins that are essential for
nuclear functions; however, overaccumulation of INM proteins results in a range of rare …

Advances in enzyme-mediated proximity labeling and its potential for plant research

A Mair, DC Bergmann - Plant Physiology, 2022 - academic.oup.com
Cellular processes rely on the intimate interplay of different molecules, including DNA, RNA,
proteins, and metabolites. Obtaining and integrating data on their abundance and dynamics …