Using transcriptomics and cell morphology data in drug discovery: The long road to practice
LL Pruteanu, A Bender - ACS Medicinal Chemistry Letters, 2023 - ACS Publications
Gene expression and cell morphology data are high-dimensional biological readouts of
much recent interest for drug discovery. They are able to describe biological systems in …
much recent interest for drug discovery. They are able to describe biological systems in …
Predicting the Mitochondrial Toxicity of Small Molecules: Insights from Mechanistic Assays and Cell Painting Data
M Garcia de Lomana, PA Marin Zapata… - Chemical Research in …, 2023 - ACS Publications
Mitochondrial toxicity is a significant concern in the drug discovery process, as compounds
that disrupt the function of these organelles can lead to serious side effects, including liver …
that disrupt the function of these organelles can lead to serious side effects, including liver …
[HTML][HTML] A Decade in a Systematic Review: The Evolution and Impact of Cell Painting
High-content image-based assays have fueled significant discoveries in the life sciences in
the past decade (2013–2023), including novel insights into disease etiology, mechanism of …
the past decade (2013–2023), including novel insights into disease etiology, mechanism of …
Assessment of Drug-Induced Liver Injury through Cell Morphology and Gene Expression Analysis
V Lejal, N Cerisier, D Rouquié… - Chemical Research in …, 2023 - ACS Publications
Drug-induced liver injury (DILI) is a significant concern in drug development, often leading to
drug withdrawal. Although many studies aim to identify biomarkers and gene/pathway …
drug withdrawal. Although many studies aim to identify biomarkers and gene/pathway …
Deep representation learning determines drug mechanism of action from cell painting images
Fluorescent-based microscopy screens carry a broad range of phenotypic information about
how compounds affect cellular biology. From changes in cellular morphology observed in …
how compounds affect cellular biology. From changes in cellular morphology observed in …
Cell Painting-based bioactivity prediction boosts high-throughput screening hit-rates and compound diversity
J Fredin Haslum, CH Lardeau, J Karlsson… - Nature …, 2024 - nature.com
Identifying active compounds for a target is a time-and resource-intensive task in early drug
discovery. Accurate bioactivity prediction using morphological profiles could streamline the …
discovery. Accurate bioactivity prediction using morphological profiles could streamline the …
Microsnoop: A generalist tool for microscopy image representation
Accurate profiling of microscopy images from small scale to high throughput is an essential
procedure in basic and applied biological research. Here, we present Microsnoop, a novel …
procedure in basic and applied biological research. Here, we present Microsnoop, a novel …
[HTML][HTML] Designing microplate layouts using artificial intelligence
Microplates are indispensable in large-scale biomedical experiments but the physical
location of samples and controls on the microplate can significantly affect the resulting data …
location of samples and controls on the microplate can significantly affect the resulting data …
[HTML][HTML] Artificial intelligence for high content imaging in drug discovery
J Carreras-Puigvert, O Spjuth - Current Opinion in Structural Biology, 2024 - Elsevier
Artificial intelligence (AI) and high-content imaging (HCI) are contributing to advancements
in drug discovery, propelled by the recent progress in deep neural networks. This review …
in drug discovery, propelled by the recent progress in deep neural networks. This review …
Unleashing the potential of cell painting assays for compound activities and hazards prediction
F Odje, D Meijer, E Von Coburg… - Frontiers in …, 2024 - frontiersin.org
The cell painting (CP) assay has emerged as a potent imaging-based high-throughput
phenotypic profiling (HTPP) tool that provides comprehensive input data for in silico …
phenotypic profiling (HTPP) tool that provides comprehensive input data for in silico …