[PDF][PDF] Nuclear genome organization in fungi: From gene folding to Rabl chromosomes

DE Torres, AT Reckard, AD Klocko… - FEMS Microbiology …, 2023 - academic.oup.com
Comparative genomics has recently provided unprecedented insights into the biology and
evolution of the fungal lineage. In the postgenomics era, a major research interest focuses …

The genome organization of Neurospora crassa at high resolution uncovers principles of fungal chromosome topology

S Rodriguez, A Ward, AT Reckard, Y Shtanko… - G3, 2022 - academic.oup.com
The eukaryotic genome must be precisely organized for its proper function, as genome
topology impacts transcriptional regulation, cell division, replication, and repair, among other …

Sensing of H2O2-induced oxidative stress by the UPF factor complex is crucial for activation of catalase-3 expression in Neurospora

S Shen, C Zhang, Y Meng, G Cui, Y Wang, X Liu… - Plos Genetics, 2023 - journals.plos.org
UPF-1-UPF-2-UPF-3 complex-orchestrated nonsense-mediated mRNA decay (NMD) is a
well-characterized eukaryotic cellular surveillance mechanism that not only degrades …

H3T11 phosphorylation by CKII is required for heterochromatin formation in Neurospora

Y Tian, C Zhang, X Tian, L Zhang, T Yin… - Nucleic Acids …, 2024 - academic.oup.com
Heterochromatin is a key feature of eukaryotic genomes and is crucial for maintaining
genomic stability. In fission yeast, heterochromatin nucleation is mainly mediated by DNA …

H3K56 deacetylation and H2A. Z deposition are required for aberrant heterochromatin spreading

C Zhang, Y Tian, S Song, L Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Crucial mechanisms are required to restrict self-propagating heterochromatin spreading
within defined boundaries and prevent euchromatic gene silencing. In the filamentous …

[HTML][HTML] Histone variant H2A. Z antagonizes the positive effect of the transcriptional activator CPC1 to regulate catalase-3 expression under normal and oxidative …

Q Dong, Y Wang, S Qi, K Gai, Q He, Y Wang - Free Radical Biology and …, 2018 - Elsevier
In eukaryotes, deposition of the histone variant H2A. Z into nucleosomes through the
chromatin remodeling complex, SWR1, is a crucial step in modulating gene transcription …

A constitutive heterochromatic region shapes genome organization and impacts gene expression in Neurospora crassa

AT Reckard, A Pandeya, JM Voris, CG Gonzalez Cruz… - BMC genomics, 2024 - Springer
Background Organization of the eukaryotic genome is essential for proper function,
including gene expression. In metazoans, chromatin loops and Topologically Associated …

NC2 complex is a key factor for the activation of catalase-3 transcription by regulating H2A.Z deposition

G Cui, Q Dong, J Duan, C Zhang, X Liu… - Nucleic Acids …, 2020 - academic.oup.com
Abstract Negative cofactor 2 (NC2), including two subunits NC2α and NC2β, is a conserved
positive/negative regulator of class II gene transcription in eukaryotes. It is known that NC2 …

[HTML][HTML] Modulating the aroma and taste profile of soybean using novel strains for fermentation

XH Chin, R Soh, G Chan, P Ng, A Thong… - Current Research in …, 2025 - Elsevier
A key factor influencing consumer acceptance of soybean products is the aroma and taste
profile, which can be modulated through fermentation using unique microbial strains. This …

A role for the mitotic proteins Bub3 and BuGZ in transcriptional regulation of catalase-3 expression

Y Zhou, S Shen, C Du, Y Wang, Y Liu, Q He - PLoS genetics, 2022 - journals.plos.org
The spindle assembly checkpoint factors Bub3 and BuGZ play critical roles in mitotic
process, but little is known about their roles in other cellular processes in eukaryotes. In …