Evaluating environmental DNA detection of a rare fish in turbid water using field and experimental approaches

AE Holmes, MR Baerwald, J Rodzen, BM Schreier… - PeerJ, 2024 - peerj.com
Detection sensitivity of aquatic species using environmental DNA (eDNA) generally
decreases in turbid water but is poorly characterized. In this study, eDNA detection targeted …

Escape from the heat: thermal stratification in a well-mixed estuary and implications for fish species facing a changing climate

B Mahardja, SM Bashevkin, C Pien, M Nelson… - Hydrobiologia, 2022 - Springer
Climate change may cause organisms to seek thermal refuge from rising temperatures,
either by shifting their ranges or seeking microrefugia within their existing ranges. We …

Space‐for‐time is not necessarily a substitution when monitoring the distribution of pelagic fishes in the San Francisco Bay‐Delta

A Duarte, JT Peterson - Ecology and Evolution, 2021 - Wiley Online Library
Occupancy models are often used to analyze long‐term monitoring data to better
understand how and why species redistribute across dynamic landscapes while accounting …

CRISPR‐based environmental DNA detection for a rare endangered estuarine species

RP Nagarajan, L Sanders, N Kolm, A Perez… - Environmental …, 2024 - Wiley Online Library
Environmental DNA (eDNA) methods complement traditional aquatic monitoring surveys
and are especially advantageous for rare and listed species to detect spatial and temporal …

Relations Between Abiotic and Biotic Environmental Variables and Occupancy of Delta Smelt (Hypomesus transpacificus) in Autumn

AN Hendrix, E Fleishman, MW Zillig, ED Jennings - Estuaries and Coasts, 2023 - Springer
There is much debate about the extent to which water management in the upper San
Francisco Estuary, California, affects the habitat and status of delta smelt (Hypomesus …

Imperfect detection and misidentification affect inferences from data informing water operation decisions

JE Kirsch, JT Peterson, A Duarte… - … American Journal of …, 2024 - Wiley Online Library
Objective Managers can modify river flow regimes using fish monitoring data to minimize
impacts from water management infrastructure. For example, operation of the gate …

Experimental evaluation of environmental DNA detection of a rare fish in turbid water

AE Holmes, MR Baerwald, J Rodzen, BM Schreier… - bioRxiv, 2022 - biorxiv.org
Environmental DNA (eDNA) approaches enable sensitive detection of rare aquatic species.
However, water conditions like turbidity can limit sensitivity, resulting in false negative …

[图书][B] Optimization and Validation of Chinook Salmon eDNA Detection in the San Francisco Estuary

TM Sanches - 2022 - search.proquest.com
To monitor the health of Chinook Salmon populations in California's Central Valley, it's
necessary to measure and evaluate all stages of their life cycle. The outmigration journey of …

Optimization and validation of Chinook salmon eDNA detection in the San Francisco Estuary

T Missfeldt Sanches - 2022 - escholarship.org
To monitor the health of Chinook Salmon populations in California's Central Valley, it's
necessary to measure and evaluate all stages of their life cycle. The outmigration journey of …