Through the eyes of creators: observing artificial molecular motors

IN Unksov, CS Korosec, P Surendiran… - ACS nanoscience …, 2022 - ACS Publications
Inspired by molecular motors in biology, there has been significant progress in building
artificial molecular motors, using a number of quite distinct approaches. As the constructs …

Motility of an autonomous protein-based artificial motor that operates via a burnt-bridge principle

CS Korosec, IN Unksov, P Surendiran… - Nature …, 2024 - nature.com
Inspired by biology, great progress has been made in creating artificial molecular motors.
However, the dream of harnessing proteins–the building blocks selected by nature–to …

Sterically driven current reversal in a molecular motor model

A Albaugh, G Gu, TR Gingrich - Proceedings of the …, 2023 - National Acad Sciences
Simulations can help unravel the complicated ways in which molecular structure determines
function. Here, we use molecular simulations to show how slight alterations of a molecular …

The nanocaterpillar's random walk: diffusion with ligand–receptor contacts

S Marbach, JA Zheng, M Holmes-Cerfon - Soft Matter, 2022 - pubs.rsc.org
Particles with ligand–receptor contacts bind and unbind fluctuating “legs” to surfaces, whose
fluctuations cause the particle to diffuse. Quantifying the diffusion of such “nanoscale …

Coarse-grained dynamics of transiently bound fast linkers

S Marbach, CE Miles - The Journal of Chemical Physics, 2023 - pubs.aip.org
Transient bonds between fast linkers and slower particles are widespread in physical and
biological systems. Despite their diverse structure and function, a commonality is that the …

Within-host evolution of SARS-CoV-2: how often are de novo mutations transmitted from symptomatic infections?

CS Korosec, LM Wahl, JM Heffernan - Virus Evolution, 2024 - academic.oup.com
Despite a relatively low mutation rate, the large number of severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) infections has allowed for substantial genetic …

Limits on the Precision of Catenane Molecular Motors: Insights from Thermodynamics and Molecular Dynamics Simulations

A Albaugh, RS Fu, G Gu… - Journal of Chemical Theory …, 2023 - ACS Publications
Thermodynamic uncertainty relations (TURs) relate precision to the dissipation rate, yet the
inequalities can be far from saturation. Indeed, in catenane molecular motor simulations, we …

The sliding motility of the bacilliform virions of Influenza A viruses

L Stevens, S de Buyl, BM Mognetti - Soft matter, 2023 - pubs.rsc.org
Influenza A virus (IAV) infection relies on the action of the hemagglutinin (HA) and
neuraminidase (NA) membrane proteins. The HA ligands anchor the IAV virion to the cell's …

Sliding across a surface: Particles with fixed and mobile ligands

J Lowensohn, L Stevens, D Goldstein… - The Journal of Chemical …, 2022 - pubs.aip.org
A quantitative model of the mobility of ligand-presenting particles at the interface is pivotal to
understanding important systems in biology and nanotechnology. In this work, we …

Burnt bridge ratchet motor force scales linearly with polyvalency: a computational study

AT Blanchard - Soft Matter, 2021 - pubs.rsc.org
Nano-and micro-scale burnt bridge ratchet motors, which translocate via “guide” molecules
that bind to and degrade a field of “fuel” molecules, have recently emerged in several …