[19] Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors

JA Ballesteros, H Weinstein - Methods in neurosciences, 1995 - Elsevier
Publisher Summary This chapter discusses the integrated methods for the construction of
three-dimensional models and computational probing of structure–function relations in G …

[PDF][PDF] State-of-the-art in membrane protein prediction

CP Chen, B Rost - Applied bioinformatics, 2002 - Citeseer
Membrane proteins are crucial for many biological functions and have become attractive
targets for pharmacological agents. About 10%–30% of all proteins contain membrane …

Drosophila odorant receptors are novel seven transmembrane domain proteins that can signal independently of heterotrimeric G proteins

R Smart, A Kiely, M Beale, E Vargas, C Carraher… - Insect biochemistry and …, 2008 - Elsevier
Olfaction in Drosophila is mediated by a large family of membrane-bound odorant receptor
proteins (Ors). In heterologous cells, we investigated whether the structural features and …

Basic charge clusters and predictions of membrane protein topology

D Juretić, L Zoranić, D Zucić - Journal of chemical information and …, 2002 - ACS Publications
The topology predictor SPLIT 4.0 (http://pref. etfos. hr) predicts the sequence location of
transmembrane helices by performing an automatic selection of optimal amino acid attribute …

Characterization of the infectious salmon anemia virus fusion protein

V Aspehaug, AB Mikalsen, M Snow, E Biering… - Journal of …, 2005 - Am Soc Microbiol
Infectious salmon anemia virus (ISAV) is an orthomyxovirus causing serious disease in
Atlantic salmon (Salmo salar L.). This study presents the characterization of the ISAV 50-kDa …

A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC)

AG De Brevern, H Wong, C Tournamille, Y Colin… - … et Biophysica Acta (BBA …, 2005 - Elsevier
The Duffy antigen/receptor for chemokine (DARC) is an erythrocyte receptor for malaria
parasites (Plasmodium vivax and Plasmodium knowlesi) and for chemokines. In contrast to …

Third generation prediction of secondary structures

B Rost, C Sander - Protein structure prediction: Methods and protocols, 2000 - Springer
The sequence-structure gap is rapidly increasing. Currently, databases for protein
sequences (eg, SWISS-PROT [1]) are expanding rapidly, largely due to large-scale genome …

[HTML][HTML] Rice black-streaked dwarf virus P10 induces membranous structures at the ER and elicits the unfolded protein response in Nicotiana benthamiana

Z Sun, DI Yang, LI Xie, L Sun, S Zhang, Q Zhu, J Li… - Virology, 2013 - Elsevier
Endoplasmic reticular (ER) membrane modifications play an important role in viral RNA
replication and virion assembly but little is known about the involvement of ER-membrane …

Carbon dioxide receptor genes in cotton bollworm Helicoverpa armigera

W Xu, A Anderson - The Science of Nature, 2015 - Springer
Carbon dioxide (CO 2) is important in insect ecology, eliciting a range of behaviours across
different species. Interestingly, the numbers of CO 2 gustatory receptors (GRs) vary among …

[PDF][PDF] Application of support vector machines in bioinformatics

JY Wang - National Taiwan University, 2002 - Citeseer
Recently a new learning method called support vector machines (SVM) has shown
comparable or better results than neural networks on some applications. In this thesis we …