Pfam: the protein families database
Pfam, available via servers in the UK (http://pfam. sanger. ac. uk/) and the USA (http://pfam.
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
janelia. org/), is a widely used database of protein families, containing 14 831 manually …
Occurrence, classification, and biological function of hydrogenases: an overview
PM Vignais, B Billoud - Chemical reviews, 2007 - ACS Publications
If the atmosphere of the early Earth was hydrogen-rich, 1 it is reasonable to think that
hydrogenases, the enzymes enabling cells to use molecular hydrogen, were probably …
hydrogenases, the enzymes enabling cells to use molecular hydrogen, were probably …
SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics
S Cabello-Aguilar, M Alame… - Nucleic acids …, 2020 - academic.oup.com
Single-cell transcriptomics offers unprecedented opportunities to infer the ligand–receptor
(LR) interactions underlying cellular networks. We introduce a new, curated LR database …
(LR) interactions underlying cellular networks. We introduce a new, curated LR database …
MitoCarta2. 0: an updated inventory of mammalian mitochondrial proteins
Mitochondria are complex organelles that house essential pathways involved in energy
metabolism, ion homeostasis, signalling and apoptosis. To understand mitochondrial …
metabolism, ion homeostasis, signalling and apoptosis. To understand mitochondrial …
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
PV Hornbeck, B Zhang, B Murray… - Nucleic acids …, 2015 - academic.oup.com
Abstract PhosphoSitePlus®(PSP, http://www. phosphosite. org/), a knowledgebase
dedicated to mammalian post-translational modifications (PTMs), contains over 330 000 non …
dedicated to mammalian post-translational modifications (PTMs), contains over 330 000 non …
Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies
Accurate deleteriousness prediction for nonsynonymous variants is crucial for distinguishing
pathogenic mutations from background polymorphisms in whole exome sequencing (WES) …
pathogenic mutations from background polymorphisms in whole exome sequencing (WES) …
AF2Complex predicts direct physical interactions in multimeric proteins with deep learning
Accurate descriptions of protein-protein interactions are essential for understanding
biological systems. Remarkably accurate atomic structures have been recently computed for …
biological systems. Remarkably accurate atomic structures have been recently computed for …
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
Single nucleotide variants represent a prevalent form of genetic variation. Mutations in the
coding regions are frequently associated with the development of various genetic diseases …
coding regions are frequently associated with the development of various genetic diseases …
The reliability of metagenome-assembled genomes (MAGs) in representing natural populations: insights from comparing MAGs against isolate genomes derived from …
A Meziti, LM Rodriguez-R, JK Hatt… - Applied and …, 2021 - Am Soc Microbiol
The recovery of metagenome-assembled genomes (MAGs) from metagenomic data has
recently become a common task for microbial studies. The strengths and limitations of the …
recently become a common task for microbial studies. The strengths and limitations of the …
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
S Ovchinnikov, H Kamisetty, D Baker - elife, 2014 - elifesciences.org
Do the amino acid sequence identities of residues that make contact across protein
interfaces covary during evolution? If so, such covariance could be used to predict contacts …
interfaces covary during evolution? If so, such covariance could be used to predict contacts …