Deep learning as a tool for ecology and evolution

ML Borowiec, RB Dikow, PB Frandsen… - Methods in Ecology …, 2022 - Wiley Online Library
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …

The emerging phylogenetic perspective on the evolution of actinopterygian fishes

A Dornburg, TJ Near - Annual Review of Ecology, Evolution …, 2021 - annualreviews.org
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century
marked a paradigm shift in understanding the evolutionary history of half of living …

Atlas of Brazilian snakes: verified point-locality maps to mitigate the Wallacean shortfall in a megadiverse snake fauna

CC Nogueira, AJS Argôlo, V Arzamendia… - South American Journal …, 2019 - BioOne
Accurate and detailed species distribution maps are fundamental for documenting and
interpreting biological diversity. For snakes, an ecologically diverse group of reptiles …

[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life

PM Hime, AR Lemmon, ECM Lemmon… - Systematic …, 2021 - academic.oup.com
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …

Phylogenomic subsampling and the search for phylogenetically reliable loci

N Mongiardino Koch - Molecular biology and evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …

Ancient demographics determine the effectiveness of genetic purging in endangered lizards

HX Xie, XX Liang, ZQ Chen, WM Li… - Molecular biology …, 2022 - academic.oup.com
The purging of deleterious alleles has been hypothesized to mitigate inbreeding depression,
but its effectiveness in endangered species remains debatable. To understand how …

A review of the osteoderms of lizards (Reptilia: Squamata)

C Williams, A Kirby, A Marghoub, L Kéver… - Biological …, 2022 - Wiley Online Library
Osteoderms are mineralised structures consisting mainly of calcium phosphate and
collagen. They form directly within the skin, with or without physical contact with the skeleton …

The squamate tree of life

TR Simões, RA Pyron - Bulletin of the Museum of Comparative Zoology, 2021 - BioOne
Squamates (lizards, snakes, and their kin such as amphisbaenians, or “worm lizards”)
represent the world's most diverse clade of terrestrial vertebrates with∼ 11,000 described …

Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

TR Simões, MW Caldwell, SE Pierce - BMC biology, 2020 - Springer
Background The vast majority of all life that ever existed on earth is now extinct and several
aspects of their evolutionary history can only be assessed by using morphological data from …

SquamBase—A database of squamate (Reptilia: Squamata) traits

S Meiri - Global Ecology and Biogeography, 2024 - Wiley Online Library
Motivation I present a database that contains information on multiple key traits for all 11,744
recognised species of squamates worldwide. The database encompasses key traits and a …