Spatial structure, cooperation and competition in biofilms

CD Nadell, K Drescher, KR Foster - Nature Reviews Microbiology, 2016 - nature.com
Bacteria often live within matrix-embedded communities, termed biofilms, which are now
understood to be a major mode of microbial life. The study of biofilms has revealed their vast …

[HTML][HTML] Review of pore network modelling of porous media: Experimental characterisations, network constructions and applications to reactive transport

Q Xiong, TG Baychev, AP Jivkov - Journal of contaminant hydrology, 2016 - Elsevier
Pore network models have been applied widely for simulating a variety of different physical
and chemical processes, including phase exchange, non-Newtonian displacement, non …

Biofilm-associated persistence of food-borne pathogens

A Bridier, P Sanchez-Vizuete, M Guilbaud, JC Piard… - Food …, 2015 - Elsevier
Microbial life abounds on surfaces in both natural and industrial environments, one of which
is the food industry. A solid substrate, water and some nutrients are sufficient to allow the …

[HTML][HTML] Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics

WR Harcombe, WJ Riehl, I Dukovski, BR Granger… - Cell reports, 2014 - cell.com
The interspecies exchange of metabolites plays a key role in the spatiotemporal dynamics of
microbial communities. This raises the question of whether ecosystem-level behavior of …

Role of multicellular aggregates in biofilm formation

KN Kragh, JB Hutchison, G Melaugh, C Rodesney… - MBio, 2016 - Am Soc Microbiol
In traditional models of in vitro biofilm development, individual bacterial cells seed a surface,
multiply, and mature into multicellular, three-dimensional structures. Much research has …

Individual-based modeling and ecology

V Grimm, SF Railsback - Individual-based modeling and ecology, 2013 - degruyter.com
Individual-based models are an exciting and widely used new tool for ecology. These
computational models allow scientists to explore the mechanisms through which population …

[HTML][HTML] Diffusion in biofilms

PS Stewart - Journal of bacteriology, 2003 - Am Soc Microbiol
Much of what makes life in a microbial biofilm different from life in a free aqueous
suspension can be explained by invoking the phenomenon of diffusion. This article …

[HTML][HTML] Advancements in bacteria based self-healing concrete and the promise of modelling

M Bagga, C Hamley-Bennett, A Alex… - … and Building Materials, 2022 - Elsevier
In the last two decades self-healing of concrete through microbial based carbonate
precipitation has emerged as a promising technology for making concrete structures more …

The sociobiology of biofilms

CD Nadell, JB Xavier, KR Foster - FEMS microbiology reviews, 2008 - academic.oup.com
Biofilms are densely packed communities of microbial cells that grow on surfaces and
surround themselves with secreted polymers. Many bacterial species form biofilms, and their …

Studying plasmid horizontal transfer in situ: a critical review

SJ Sørensen, M Bailey, LH Hansen, N Kroer… - Nature Reviews …, 2005 - nature.com
This review deals with the prospective, experimental documentation of horizontal gene
transfer (HGT) and its role in real-time, local adaptation. We have focused on plasmids and …