Spatial structure, cooperation and competition in biofilms
Bacteria often live within matrix-embedded communities, termed biofilms, which are now
understood to be a major mode of microbial life. The study of biofilms has revealed their vast …
understood to be a major mode of microbial life. The study of biofilms has revealed their vast …
[HTML][HTML] Review of pore network modelling of porous media: Experimental characterisations, network constructions and applications to reactive transport
Pore network models have been applied widely for simulating a variety of different physical
and chemical processes, including phase exchange, non-Newtonian displacement, non …
and chemical processes, including phase exchange, non-Newtonian displacement, non …
Biofilm-associated persistence of food-borne pathogens
Microbial life abounds on surfaces in both natural and industrial environments, one of which
is the food industry. A solid substrate, water and some nutrients are sufficient to allow the …
is the food industry. A solid substrate, water and some nutrients are sufficient to allow the …
[HTML][HTML] Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics
WR Harcombe, WJ Riehl, I Dukovski, BR Granger… - Cell reports, 2014 - cell.com
The interspecies exchange of metabolites plays a key role in the spatiotemporal dynamics of
microbial communities. This raises the question of whether ecosystem-level behavior of …
microbial communities. This raises the question of whether ecosystem-level behavior of …
Role of multicellular aggregates in biofilm formation
KN Kragh, JB Hutchison, G Melaugh, C Rodesney… - MBio, 2016 - Am Soc Microbiol
In traditional models of in vitro biofilm development, individual bacterial cells seed a surface,
multiply, and mature into multicellular, three-dimensional structures. Much research has …
multiply, and mature into multicellular, three-dimensional structures. Much research has …
Individual-based modeling and ecology
V Grimm, SF Railsback - Individual-based modeling and ecology, 2013 - degruyter.com
Individual-based models are an exciting and widely used new tool for ecology. These
computational models allow scientists to explore the mechanisms through which population …
computational models allow scientists to explore the mechanisms through which population …
[HTML][HTML] Diffusion in biofilms
PS Stewart - Journal of bacteriology, 2003 - Am Soc Microbiol
Much of what makes life in a microbial biofilm different from life in a free aqueous
suspension can be explained by invoking the phenomenon of diffusion. This article …
suspension can be explained by invoking the phenomenon of diffusion. This article …
[HTML][HTML] Advancements in bacteria based self-healing concrete and the promise of modelling
In the last two decades self-healing of concrete through microbial based carbonate
precipitation has emerged as a promising technology for making concrete structures more …
precipitation has emerged as a promising technology for making concrete structures more …
The sociobiology of biofilms
Biofilms are densely packed communities of microbial cells that grow on surfaces and
surround themselves with secreted polymers. Many bacterial species form biofilms, and their …
surround themselves with secreted polymers. Many bacterial species form biofilms, and their …
Studying plasmid horizontal transfer in situ: a critical review
This review deals with the prospective, experimental documentation of horizontal gene
transfer (HGT) and its role in real-time, local adaptation. We have focused on plasmids and …
transfer (HGT) and its role in real-time, local adaptation. We have focused on plasmids and …