Enriching contextualized language model from knowledge graph for biomedical information extraction
Biomedical information extraction (BioIE) is an important task. The aim is to analyze
biomedical texts and extract structured information such as named entities and semantic …
biomedical texts and extract structured information such as named entities and semantic …
A deep-learning system bridging molecule structure and biomedical text with comprehension comparable to human professionals
To accelerate biomedical research process, deep-learning systems are developed to
automatically acquire knowledge about molecule entities by reading large-scale biomedical …
automatically acquire knowledge about molecule entities by reading large-scale biomedical …
Text2mol: Cross-modal molecule retrieval with natural language queries
We propose a new task, Text2Mol, to retrieve molecules using natural language descriptions
as queries. Natural language and molecules encode information in very different ways …
as queries. Natural language and molecules encode information in very different ways …
COVID-19 literature knowledge graph construction and drug repurposing report generation
To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant
biomedical knowledge in scientific literature to understand the disease mechanism and …
biomedical knowledge in scientific literature to understand the disease mechanism and …
A survey on deep learning event extraction: Approaches and applications
Event extraction (EE) is a crucial research task for promptly apprehending event information
from massive textual data. With the rapid development of deep learning, EE based on deep …
from massive textual data. With the rapid development of deep learning, EE based on deep …
[PDF][PDF] Abstract meaning representation guided graph encoding and decoding for joint information extraction
Abstract The tasks of Rich Semantic Parsing, such as Abstract Meaning Representation
(AMR), share similar goals with Information Extraction (IE) to convert natural language texts …
(AMR), share similar goals with Information Extraction (IE) to convert natural language texts …
Joint biomedical entity and relation extraction with knowledge-enhanced collective inference
Compared to the general news domain, information extraction (IE) from biomedical text
requires much broader domain knowledge. However, many previous IE methods do not …
requires much broader domain knowledge. However, many previous IE methods do not …
Named entity recognition in Spanish biomedical literature: Short review and BERT model
L Akhtyamova - 2020 26th Conference of Open Innovations …, 2020 - ieeexplore.ieee.org
Entity Recognition (NER) is the first step for knowledge acquisition when we deal with an
unknown corpus of texts. Having received these entities, we have an opportunity to form …
unknown corpus of texts. Having received these entities, we have an opportunity to form …
Biomedical event extraction with hierarchical knowledge graphs
Biomedical event extraction is critical in understanding biomolecular interactions described
in scientific corpus. One of the main challenges is to identify nested structured events that …
in scientific corpus. One of the main challenges is to identify nested structured events that …