Cytomegalovirus latency and reactivation: an intricate interplay with the host immune response

E Forte, Z Zhang, EB Thorp, M Hummel - Frontiers in cellular and …, 2020 - frontiersin.org
CMV is an ancient herpesvirus that has co-evolved with its host over millions of years. The
236 kbp genome encodes at least 165 genes, four non-coding RNAs and 14 miRNAs. Of the …

The human cytomegalovirus decathlon: Ten critical replication events provide opportunities for restriction

DL Turner, RA Mathias - Frontiers in Cell and Developmental Biology, 2022 - frontiersin.org
Human cytomegalovirus (HCMV) is a ubiquitous human pathogen that can cause severe
disease in immunocompromised individuals, transplant recipients, and to the developing …

Differential dependencies of human RNA polymerase II promoters on TBP, TAF1, TFIIB and XPB

JF Santana, GS Collins, M Parida, DS Luse… - Nucleic acids …, 2022 - academic.oup.com
The effects of rapid acute depletion of components of RNA polymerase II (Pol II) general
transcription factors (GTFs) that are thought to be critical for formation of preinitiation …

Differences in RNA polymerase II complexes and their interactions with surrounding chromatin on human and cytomegalovirus genomes

BM Spector, M Parida, M Li, CB Ball, JL Meier… - Nature …, 2022 - nature.com
Interactions of the RNA polymerase II (Pol II) preinitiation complex (PIC) and paused early
elongation complexes with the first downstream (+ 1) nucleosome are thought to be …

Human cytomegalovirus IE2 drives transcription initiation from a select subset of late infection viral promoters by host RNA polymerase II

M Li, CB Ball, G Collins, Q Hu, DS Luse… - PLoS …, 2020 - journals.plos.org
Herpesvirus late promoters activate gene expression after viral DNA synthesis has begun.
Alphaherpesviruses utilize a viral immediate-early protein to do this, whereas beta-and …

Human cytomegalovirus long noncoding RNA4. 9 regulates viral DNA replication

J Tai-Schmiedel, S Karniely, B Lau, A Ezra… - PLoS …, 2020 - journals.plos.org
Viruses are known for their extremely compact genomes composed almost entirely of protein-
coding genes. Nonetheless, four long noncoding RNAs (lncRNAs) are encoded by human …

A unified view of the sequence and functional organization of the human RNA polymerase II promoter

DS Luse, M Parida, BM Spector, KA Nilson… - Nucleic acids …, 2020 - academic.oup.com
To better understand human RNA polymerase II (Pol II) promoters in the context of promoter-
proximal pausing and local chromatin organization, 5′ and 3′ ends of nascent capped …

Human cytomegalovirus infection elicits global changes in host transcription by RNA polymerases I, II, and III

CB Ball, M Parida, M Li, BM Spector, GA Suarez… - Viruses, 2022 - mdpi.com
How human cytomegalovirus (HCMV) infection impacts the transcription of the host genome
remains incompletely understood. Here, we examine the global consequences of infection …

Comprehensive annotations of human herpesvirus 6A and 6B genomes reveal novel and conserved genomic features

Y Finkel, D Schmiedel, J Tai-Schmiedel, A Nachshon… - Elife, 2020 - elifesciences.org
Human herpesvirus-6 (HHV-6) A and B are ubiquitous betaherpesviruses, infecting the
majority of the human population. They encompass large genomes and our understanding …

HSV-1 infection induces a downstream shift of promoter-proximal pausing for host genes

E Weiß, T Hennig, P Graßl, L Djakovic… - Journal of …, 2023 - Am Soc Microbiol
ABSTRACT Herpes simplex virus 1 (HSV-1) infection exerts a profound shutoff of host gene
expression at multiple levels. Recently, HSV-1 infection was reported to also impact …