Copy number variation in domestication
ZN Lye, MD Purugganan - Trends in Plant Science, 2019 - cell.com
Domesticated plants have long served as excellent models for studying evolution. Many
genes and mutations underlying important domestication traits have been identified, and …
genes and mutations underlying important domestication traits have been identified, and …
Molecular tools and analytical approaches for the characterization of farm animal genetic diversity
JA Lenstra, LF Groeneveld, H Eding… - Animal …, 2012 - Wiley Online Library
Genetic studies of livestock populations focus on questions of domestication, within‐and
among‐breed diversity, breed history and adaptive variation. In this review, we describe the …
among‐breed diversity, breed history and adaptive variation. In this review, we describe the …
Copy number variation of individual cattle genomes using next-generation sequencing
DM Bickhart, Y Hou, SG Schroeder, C Alkan… - Genome …, 2012 - genome.cshlp.org
Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in
or near segmental duplication regions are often intractable. Using a read depth approach …
or near segmental duplication regions are often intractable. Using a read depth approach …
Copy number variation in the genomes of domestic animals
A Clop, O Vidal, M Amills - Animal genetics, 2012 - Wiley Online Library
Copy number variation (CNV) might be one of the main contributors to phenotypic diversity
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …
The challenges and importance of structural variation detection in livestock
DM Bickhart, GE Liu - Frontiers in genetics, 2014 - frontiersin.org
Recent studies in humans and other model organisms have demonstrated that structural
variants (SVs) comprise a substantial proportion of variation among individuals of each …
variants (SVs) comprise a substantial proportion of variation among individuals of each …
Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
X Cui, Y Hou, S Yang, Y Xie, S Zhang, Y Zhang… - BMC genomics, 2014 - Springer
Abstract Background Recently, RNA sequencing (RNA-seq) has rapidly emerged as a major
transcriptome profiling system. Elucidation of the bovine mammary gland transcriptome by …
transcriptome profiling system. Elucidation of the bovine mammary gland transcriptome by …
Bovine Exome Sequence Analysis and Targeted SNP Genotyping of Recessive Fertility Defects BH1, HH2, and HH3 Reveal a Putative Causative Mutation in SMC2 …
The recent discovery of bovine haplotypes with negative effects on fertility in the Brown
Swiss, Holstein, and Jersey breeds has allowed producers to identify carrier animals using …
Swiss, Holstein, and Jersey breeds has allowed producers to identify carrier animals using …
A meta-assembly of selection signatures in cattle
Since domestication, significant genetic improvement has been achieved for many traits of
commercial importance in cattle, including adaptation, appearance and production. In …
commercial importance in cattle, including adaptation, appearance and production. In …
Genome-wide detection of CNVs in Chinese indigenous sheep with different types of tails using ovine high-density 600K SNP arrays
C Zhu, H Fan, Z Yuan, S Hu, X Ma, J Xuan, H Wang… - Scientific reports, 2016 - nature.com
Chinese indigenous sheep can be classified into three types based on tail morphology: fat-
tailed, fat-rumped, and thin-tailed sheep, of which the typical breeds are large-tailed Han …
tailed, fat-rumped, and thin-tailed sheep, of which the typical breeds are large-tailed Han …
Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
Abstract Background Copy number variations (CNVs) are widespread in the human or
animal genome and are a significant source of genetic variation, which has been …
animal genome and are a significant source of genetic variation, which has been …