Fungal identification using molecular tools: a primer for the natural products research community

HA Raja, AN Miller, CJ Pearce… - Journal of natural …, 2017 - ACS Publications
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …

Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

Competitive interaction with keystone taxa induced negative priming under biochar amendments

L Chen, Y Jiang, C Liang, Y Luo, Q Xu, C Han, Q Zhao… - Microbiome, 2019 - Springer
Background Biochar amendments have been widely proposed as a conventional and
efficient strategy to promote soil organic carbon (SOC) sequestration via negative priming …

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies

M Op De Beeck, B Lievens, P Busschaert, S Declerck… - PloS one, 2014 - journals.plos.org
Current metabarcoding studies aiming to characterize microbial communities generally rely
on the amplification and sequencing of relatively short DNA regions. For fungi, the internal …

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …

Forgotten fungi—the gut mycobiome in human health and disease

CE Huseyin, PW O'Toole, PD Cotter… - FEMS Microbiology …, 2017 - academic.oup.com
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …

Assembly of abundant and rare bacterial and fungal sub-communities in different soil aggregate sizes in an apple orchard treated with cover crop and fertilizer

W Zheng, Z Zhao, F Lv, R Wang, Z Wang, Z Zhao… - Soil Biology and …, 2021 - Elsevier
Soil bacterial and fungal communities often comprise the “abundant biosphere” and “rare
biosphere”, which co-exist in soil aggregates to form a complex system of inter-species …

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

AE Zanne, K Abarenkov, ME Afkhami… - Biological …, 2020 - Wiley Online Library
Fungi play many essential roles in ecosystems. They facilitate plant access to nutrients and
water, serve as decay agents that cycle carbon and nutrients through the soil, water and …

Illumina metabarcoding of a soil fungal community

PA Schmidt, M Bálint, B Greshake, C Bandow… - Soil Biology and …, 2013 - Elsevier
Next generation metabarcoding is becoming an indispensable tool in fungal community
ecology. Here we tested Illumina metabarcoding, a method that generates shorter reads but …

Cutaneous Malassezia: Commensal, Pathogen, or Protector?

SH Vijaya Chandra, R Srinivas… - Frontiers in cellular …, 2021 - frontiersin.org
The skin microbial community is a multifunctional ecosystem aiding prevention of infections
from transient pathogens, maintenance of host immune homeostasis, and skin health. A …