Alignment-free sequence analysis and applications

J Ren, X Bai, YY Lu, K Tang, Y Wang… - Annual Review of …, 2018 - annualreviews.org
Genome and metagenome comparisons based on large amounts of next-generation
sequencing (NGS) data pose significant challenges for alignment-based approaches due to …

Sequence-based information-theoretic features for gene essentiality prediction

D Nigatu, P Sobetzko, M Yousef, W Henkel - BMC bioinformatics, 2017 - Springer
Background Identification of essential genes is not only useful for our understanding of the
minimal gene set required for cellular life but also aids the identification of novel drug targets …

Computing reliability indices of a wind power system via Markov chain modelling of wind speed

S Eryilmaz, I Bulanik, Y Devrim - … Part O: Journal of Risk and …, 2024 - journals.sagepub.com
Statistical modelling of wind speed is of great importance in the evaluation of wind farm
performance and power production. Various models have been proposed in the literature …

[图书][B] Discrete stochastic models and applications for reliability engineering and statistical quality control

S Eryilmaz - 2022 - taylorfrancis.com
Discrete stochastic models are tools that allow us to understand, control, and optimize
engineering systems and processes. This book provides real-life examples and illustrations …

Evaluating the efficiency of off-ball screens in elite basketball teams via second-order Markov Modelling

N Stavropoulos, A Papadopoulou, P Kolias - Mathematics, 2021 - mdpi.com
In basketball, the offensive movements on both strong and weak sides and tactical behavior
play major roles in the effectiveness of a team's offense. In the literature, studies are mostly …

Learning the Markov order of paths in graphs

LV Petrovic, I Scholtes - Proceedings of the ACM web conference 2022, 2022 - dl.acm.org
We address the problem of learning the Markov order in categorical sequences that
represent paths in a network, ie, sequences of variable lengths where transitions between …

Markov chain order estimation with conditional mutual information

M Papapetrou, D Kugiumtzis - Physica A: Statistical Mechanics and its …, 2013 - Elsevier
We introduce the Conditional Mutual Information (CMI) for the estimation of the Markov chain
order. For a Markov chain of K symbols, we define CMI of order m, Ic (m), as the mutual …

DNA viewed as an out-of-equilibrium structure

A Provata, C Nicolis, G Nicolis - Physical Review E, 2014 - APS
The complexity of the primary structure of human DNA is explored using methods from
nonequilibrium statistical mechanics, dynamical systems theory, and information theory. A …

Statistics and probability theory in renewable energy: Teaching and research

S Eryilmaz, M Kateri, Y Devrim - Applied Stochastic Models in …, 2023 - Wiley Online Library
In this paper, the key‐role and utility of statistics and probability theory in the field of
renewable energy are emphasized and illustrated via specific examples. It is demonstrated …

Markov chain order estimation with parametric significance tests of conditional mutual information

M Papapetrou, D Kugiumtzis - Simulation Modelling Practice and Theory, 2016 - Elsevier
Besides the different approaches suggested in the literature, accurate estimation of the order
of a Markov chain from a given symbol sequence is an open issue, especially when the …