Targeting stressor-induced dysfunctions in protein–protein interaction networks via epichaperomes
Diseases are manifestations of complex changes in protein–protein interaction (PPI)
networks whereby stressors, genetic, environmental, and combinations thereof, alter …
networks whereby stressors, genetic, environmental, and combinations thereof, alter …
[HTML][HTML] Application of proteomics in the discovery of radiosensitive cancer biomarkers
H Luo, H Ge - Frontiers in Oncology, 2022 - frontiersin.org
Radiation therapy remains an important component of cancer treatment. Gene-encoded
proteins were the actual executors of cellular functions. Proteomic was a novel technology …
proteins were the actual executors of cellular functions. Proteomic was a novel technology …
EPGAT: gene essentiality prediction with graph attention networks
J Schapke, A Tavares… - … /ACM Transactions on …, 2021 - ieeexplore.ieee.org
Identifying essential genes and proteins is a critical step towards a better understanding of
human biology and pathology. Computational approaches helped to mitigate experimental …
human biology and pathology. Computational approaches helped to mitigate experimental …
[HTML][HTML] Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
Background Recent advances in single-cell RNA sequencing have allowed researchers to
explore transcriptional function at a cellular level. In particular, single-cell RNA sequencing …
explore transcriptional function at a cellular level. In particular, single-cell RNA sequencing …
Optimization of a modeling platform to predict oncogenes from genome‐scale metabolic networks of non‐small‐cell lung cancers
YT Wang, MR Lin, WC Chen, WH Wu… - FEBS Open Bio, 2021 - Wiley Online Library
Cancer cell dysregulations result in the abnormal regulation of cellular metabolic pathways.
By simulating this metabolic reprogramming using constraint‐based modeling approaches …
By simulating this metabolic reprogramming using constraint‐based modeling approaches …
[HTML][HTML] Genome-scale metabolic modeling with protein expressions of normal and cancerous colorectal tissues for oncogene inference
FS Wang, WH Wu, WS Hsiu, YJ Liu, KW Chuang - Metabolites, 2019 - mdpi.com
Although cancer has historically been regarded as a cell proliferation disorder, it has
recently been considered a metabolic disease. The first discovery of metabolic alterations in …
recently been considered a metabolic disease. The first discovery of metabolic alterations in …
[HTML][HTML] Network-based approach and IVI methodologies, a combined data investigation identified probable key genes in cardiovascular disease and chronic kidney …
In fact, the risk of dying from CVD is significant when compared to the risk of developing end-
stage renal disease (ESRD). Moreover, patients with severe CKD are often excluded from …
stage renal disease (ESRD). Moreover, patients with severe CKD are often excluded from …
Prospects and challenges of cancer systems medicine: from genes to disease networks
It is becoming evident that holistic perspectives toward cancer are crucial in deciphering the
overwhelming complexity of tumors. Single-layer analysis of genome-wide data has greatly …
overwhelming complexity of tumors. Single-layer analysis of genome-wide data has greatly …
[HTML][HTML] Lysozyme activity as an indicator of innate immunity of tilapia (Oreochromis niloticus) when challenged with LPS and Streptococcus agalactiae
The objective of this study was to fully describe the protocol with standardized modifications
and evaluate the lysozyme activity, an indicator of innate immunity in tilapia, to compare …
and evaluate the lysozyme activity, an indicator of innate immunity in tilapia, to compare …
[HTML][HTML] Next-Generation Sequencing and Quantitative Proteomics of Hutchinson-Gilford progeria syndrome-derived cells point to a role of nucleotide metabolism in …
J Mateos, J Fafian-Labora, M Morente-Lopez… - PLoS …, 2018 - journals.plos.org
Hutchinson-Gilford progeria syndrome (HGPS) is a very rare fatal disease characterized for
accelerated aging. Although the causal agent, a point mutation in LMNA gene, was …
accelerated aging. Although the causal agent, a point mutation in LMNA gene, was …