Structural variant calling: the long and the short of it
Recent research into structural variants (SVs) has established their importance to medicine
and molecular biology, elucidating their role in various diseases, regulation of gene …
and molecular biology, elucidating their role in various diseases, regulation of gene …
Building pan-genome infrastructures for crop plants and their use in association genetics
Pan-genomic studies aim at representing the entire sequence diversity within a species to
provide useful resources for evolutionary studies, functional genomics and breeding of …
provide useful resources for evolutionary studies, functional genomics and breeding of …
Comparative analysis of 16S rRNA gene and metagenome sequencing in pediatric gut microbiomes
The colonization of the human gut microbiome begins at birth, and over time, these microbial
communities become increasingly complex. Most of what we currently know about the …
communities become increasingly complex. Most of what we currently know about the …
VISTA: computational tools for comparative genomics
Abstract Comparison of DNA sequences from different species is a fundamental method for
identifying functional elements in genomes. Here, we describe the VISTA family of tools …
identifying functional elements in genomes. Here, we describe the VISTA family of tools …
Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes
WJ Kent, R Baertsch, A Hinrichs… - Proceedings of the …, 2003 - National Acad Sciences
This study examines genomic duplications, deletions, and rearrangements that have
happened at scales ranging from a single base to complete chromosomes by comparing the …
happened at scales ranging from a single base to complete chromosomes by comparing the …
The diploid genome sequence of an individual human
Presented here is a genome sequence of an individual human. It was produced from∼ 32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
G Andrey, T Montavon, B Mascrez, F Gonzalez… - Science, 2013 - science.org
Introduction During vertebrate limb development, gene members of the HoxD cluster are
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
M Hanikenne, IN Talke, MJ Haydon, C Lanz, A Nolte… - Nature, 2008 - nature.com
Little is known about the types of mutations underlying the evolution of species-specific
traits. The metal hyperaccumulator Arabidopsis halleri has the rare ability to colonize heavy …
traits. The metal hyperaccumulator Arabidopsis halleri has the rare ability to colonize heavy …
Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells
Y Zheng, SZ Josefowicz, A Kas, TT Chu, MA Gavin… - Nature, 2007 - nature.com
Transcription factor Foxp3 (forkhead box P3), restricted in its expression to a specialized
regulatory CD4+ T-cell subset (TR) with a dedicated suppressor function, controls TR …
regulatory CD4+ T-cell subset (TR) with a dedicated suppressor function, controls TR …
Computational identification of DrosophilamicroRNA genes
Background MicroRNAs (miRNAs) are a large family of 21-22 nucleotide non-coding RNAs
with presumed post-transcriptional regulatory activity. Most miRNAs were identified by direct …
with presumed post-transcriptional regulatory activity. Most miRNAs were identified by direct …