A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Identifying the morphologic basis for radiomic features in distinguishing different Gleason grades of prostate cancer on MRI: Preliminary findings

G Penzias, A Singanamalli, R Elliott, J Gollamudi… - PloS one, 2018 - journals.plos.org
Translation of radiomics into the clinic may require a more comprehensive understanding of
the underlying morphologic tissue characteristics they reflect. In the context of prostate …

Correlation between MRI phenotypes and a genomic classifier of prostate cancer: preliminary findings

AS Purysko, C Magi-Galluzzi, OY Mian, S Sittenfeld… - European …, 2019 - Springer
Objectives We sought to evaluate the correlation between MRI phenotypes of prostate
cancer as defined by PI-RADS v2 and the Decipher Genomic Classifier (used to estimate the …

Full resolution reconstruction of whole-mount sections from digitized individual tissue fragments

D Schouten, J van der Laak, B van Ginneken… - Scientific Reports, 2024 - nature.com
Whole-mount sectioning is a technique in histopathology where a full slice of tissue, such as
a transversal cross-section of a prostate specimen, is prepared on a large microscope slide …

Reconstructing virtual large slides can improve the accuracy and consistency of tumor bed evaluation for breast cancer after neoadjuvant therapy

D Han, J Liao, M Zhang, C Qin, M Han, C Wu, J Li… - Diagnostic …, 2022 - Springer
Background To explore whether the “WSI Stitcher”, a program we developed for
reconstructing virtual large slide through whole slide imaging fragments stitching, can …

[HTML][HTML] Image registration of in vivo micro-ultrasound and ex vivo pseudo-whole mount histopathology images of the prostate: A proof-of-concept study

M Imran, B Nguyen, J Pensa, SM Falzarano… - … Signal Processing and …, 2024 - Elsevier
Early diagnosis of prostate cancer greatly improves a patient's 5-year survival rate. MRI-
guided prostate biopsy, the most accurate diagnostic method, offers high sensitivity but …

StitchPro for Computational Pathology Stitching in Patients with Prostate Cancer

ASC Verde, JG de Almeida, J Fonseca… - 2024 IEEE …, 2024 - ieeexplore.ieee.org
A survey by the International Society of Urological Pathology indicates that only a limited
number of respondents implement whole-mount histopathology in their clinical routines …

Biomass Pretreatment and Enzymatic Hydrolysis Dynamics Analysis Based on Particle Size Imaging

D Kapsokalyvas, A Wilbers… - Microscopy and …, 2018 - academic.oup.com
Parameters such as pretreatment method, enzyme type and concentration, determine the
conversion efficiency of biomass' cellulose and hemicellulose to glucose and mainly xylose …

PythoStitcher: an iterative approach for stitching digitized tissue fragments into full resolution whole-mount reconstructions

DN Schouten, GJS Litjens - Medical Imaging 2023: Digital and …, 2023 - spiedigitallibrary.org
In histopathology, whole-mount sections (WMS) can be utilized to capture entire cross-
sections of excised tissue, thereby reducing the number of slides per case, preserving tissue …

NOVEL AI APPROACHES FOR INTEGRATING NON-IMAGING AND IMAGING ACROSS LENGTH SCALES FOR DISEASE RISK STRATIFICATION

A Hiremath - 2022 - rave.ohiolink.edu
Most of the current AI methods are based on a single modality or based of a single
biomarker. However, information across different modalities and scales may hold …