A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
Discovering a three dimensional structure of a protein is a challenging task in biological
science. Classifying a protein into one of its folds is an intermediate step for deciphering the …
science. Classifying a protein into one of its folds is an intermediate step for deciphering the …
[HTML][HTML] Predicting subcellular localization of multi-label proteins by incorporating the sequence features into Chou's PseAAC
F Javed, M Hayat - Genomics, 2019 - Elsevier
The emergence of numerous genome projects has made the experimental classification of
the protein localization almost impossible due to the exponential increase in the number of …
the protein localization almost impossible due to the exponential increase in the number of …
SDBP-Pred: Prediction of single-stranded and double-stranded DNA-binding proteins by extending consensus sequence and K-segmentation strategies into PSSM
Identification of DNA-binding proteins (DNA-BPs) is a hot issue in protein science due to its
key role in various biological processes. These processes are highly concerned with DNA …
key role in various biological processes. These processes are highly concerned with DNA …
A tri-gram based feature extraction technique using linear probabilities of position specific scoring matrix for protein fold recognition
In biological sciences, the deciphering of a three dimensional structure of a protein
sequence is considered to be an important and challenging task. The identification of protein …
sequence is considered to be an important and challenging task. The identification of protein …
A protein structural classes prediction method based on predicted secondary structure and PSI-BLAST profile
S Ding, Y Li, Z Shi, S Yan - Biochimie, 2014 - Elsevier
Abstract Knowledge of protein secondary structural classes plays an important role in
understanding protein folding patterns. In this paper, 25 features based on position-specific …
understanding protein folding patterns. In this paper, 25 features based on position-specific …
A combination of feature extraction methods with an ensemble of different classifiers for protein structural class prediction problem
Better understanding of structural class of a given protein reveals important information
about its overall folding type and its domain. It can also be directly used to provide critical …
about its overall folding type and its domain. It can also be directly used to provide critical …
A computational method for prediction of xylanase enzymes activity in strains of Bacillus subtilis based on pseudo amino acid composition features
S Ariaeenejad, M Mousivand, P Moradi Dezfouli… - PLoS …, 2018 - journals.plos.org
Xylanases are hydrolytic enzymes which based on physicochemical properties, structure,
mode of action and substrate specificities are classified into various glycoside hydrolase …
mode of action and substrate specificities are classified into various glycoside hydrolase …
Profold: Protein fold classification with additional structural features and a novel ensemble classifier
D Chen, X Tian, B Zhou, J Gao - BioMed research international, 2016 - Wiley Online Library
Protein fold classification plays an important role in both protein functional analysis and drug
design. The number of proteins in PDB is very large, but only a very small part is categorized …
design. The number of proteins in PDB is very large, but only a very small part is categorized …
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition
Background Assigning a protein into one of its folds is a transitional step for discovering
three dimensional protein structure, which is a challenging task in bimolecular (biological) …
three dimensional protein structure, which is a challenging task in bimolecular (biological) …
A segmentation-based method to extract structural and evolutionary features for protein fold recognition
Protein fold recognition (PFR) is considered as an important step towards the protein
structure prediction problem. Despite all the efforts that have been made so far, finding an …
structure prediction problem. Despite all the efforts that have been made so far, finding an …