How the PhoP/PhoQ System Controls Virulence and Mg2+ Homeostasis: Lessons in Signal Transduction, Pathogenesis, Physiology, and Evolution

EA Groisman, A Duprey, J Choi - Microbiology and Molecular …, 2021 - Am Soc Microbiol
SUMMARY The PhoP/PhoQ two-component system governs virulence, Mg2+ homeostasis,
and resistance to a variety of antimicrobial agents, including acidic pH and cationic …

Biphasic amplitude oscillator characterized by distinct dynamics of trough and crest

J Jin, F Xu, Z Liu, H Qi, C Yao, J Shuai, X Li - Physical Review E, 2023 - APS
Biphasic amplitude dynamics (BAD) of oscillation have been observed in many biological
systems. However, the specific topology structure and regulatory mechanisms underlying …

Para-chloro-meta-xylenol reshaped the fates of antibiotic resistance genes during sludge fermentation: Insights of cell membrane permeability, bacterial structure and …

W Du, T Wang, F Wang, Z Li, W Huang, J Tai… - Science of The Total …, 2022 - Elsevier
The occurrence of para-chloro-meta-xylenol (PCMX, as largely consumed antimicrobial
chemicals) in waste activated sludge (WAS) would pose environmental risks for WAS …

Parachlorometaxylenol stress caused multidrug-type antibiotic resistance genes proliferation via simultaneously reshaping microbial community and interfering …

W Cao, W Du, S Fang, Q Wu, Z Wei, Z Xie, Y Su… - Environmental …, 2024 - Elsevier
Despite biological wastewater treatment processes (eg, sequencing batch reactors (SBR))
being able to reduce the dissemination of antibiotic resistance genes (ARGs), the variation …

Network modeling-based identification of the switching targets between pyroptosis and secondary pyroptosis

L Zhu, X Li, F Xu, Z Yin, J Jin, Z Liu, H Qi… - Chaos, Solitons & …, 2022 - Elsevier
The newly identified cell death type, pyroptosis plays crucial roles in various diseases. Most
recently, mounting evidence accumulates that pyroptotic signaling is highly correlated with …

A unified approach to dissecting biphasic responses in cell signaling

V Ramesh, J Krishnan - Elife, 2023 - elifesciences.org
Biphasic responses are encountered at all levels in biological systems. At the cellular level,
biphasic dose-responses are widely encountered in cell signaling and post-translational …

scGIR: deciphering cellular heterogeneity via gene ranking in single-cell weighted gene correlation networks

F Xu, H Hu, H Lin, J Lu, F Cheng, J Zhang… - Briefings in …, 2024 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for investigating
cellular heterogeneity through high-throughput analysis of individual cells. Nevertheless …

The spring-like effect of microRNA-31 in balancing inflammatory and regenerative responses in colitis

J Qu, C Shao, Y Ying, Y Wu, W Liu, Y Tian… - Frontiers in …, 2022 - frontiersin.org
Inflammatory bowel diseases (IBDs) are chronic inflammatory disorders caused by the
disruption of immune tolerance to the gut microbiota. MicroRNA-31 (MIR31) has been …

[HTML][HTML] Incoherent feedforward loop dominates the robustness and tunability of necroptosis biphasic, emergent, and coexistent dynamics

F Xu, X Li, R Wu, H Qi, J Jin, Z Liu, Y Wu, H Lin… - Fundamental …, 2024 - Elsevier
Biphasic dynamics, the variable-dependent ability to enhance or restrain biological function,
is prevalent in natural systems. Accompanied by biphasic dynamics, necroptosis signaling …

Topological design principle for the robustness of necroptosis biphasic, emergent, and coexistent (BEC) dynamics

F Xu, X Li, R Wu, H Qi, J Jin, Z Liu, Y Wu, H Lin, C Shen… - bioRxiv, 2023 - biorxiv.org
Biphasic dynamics, the variable-dependent ability to enhance or restrain biological function,
is prevalent in natural systems. Accompanied by biphasic dynamics, necroptosis signaling …