Modulation of host nuclear ploidy: a common plant biotroph mechanism
MC Wildermuth - Current opinion in plant biology, 2010 - Elsevier
Obligate plant biotrophs often establish highly specialized and localized interaction sites
where sustained nutrient exchange occurs. Increased plant nuclear DNA ploidy at or …
where sustained nutrient exchange occurs. Increased plant nuclear DNA ploidy at or …
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
Although the timing and extent of a whole-genome duplication occurring in the common
lineage of most modern cereals are clear, the existence or extent of more ancient genome …
lineage of most modern cereals are clear, the existence or extent of more ancient genome …
Computational methods for Gene Orthology inference
DM Kristensen, YI Wolf, AR Mushegian… - Briefings in …, 2011 - academic.oup.com
Accurate inference of orthologous genes is a pre-requisite for most comparative genomics
studies, and is also important for functional annotation of new genomes. Identification of …
studies, and is also important for functional annotation of new genomes. Identification of …
Maintenance and loss of duplicated genes by dosage subfunctionalization
Whole-genome duplications (WGDs) have contributed to gene-repertoire enrichment in
many eukaryotic lineages. However, most duplicated genes are eventually lost and it is still …
many eukaryotic lineages. However, most duplicated genes are eventually lost and it is still …
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
The understanding of selective constraints affecting genes is a major issue in biology. It is
well established that gene expression level is a major determinant of the rate of protein …
well established that gene expression level is a major determinant of the rate of protein …
Horizontal transfer and evolution of the biosynthetic gene cluster for benzoxazinoids in plants
Benzoxazinoids are a class of protective and allelopathic plant secondary metabolites that
have been identified in multiple grass species and are encoded by the Bx biosynthetic gene …
have been identified in multiple grass species and are encoded by the Bx biosynthetic gene …
Differential retention and divergent resolution of duplicate genes following whole-genome duplication
The Paramecium aurelia complex is a group of 15 species that share at least three past
whole-genome duplications (WGDs). The macronuclear genome sequences of P. biaurelia …
whole-genome duplications (WGDs). The macronuclear genome sequences of P. biaurelia …
Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations
Heterosis, the superiority of hybrids over their parents for quantitative traits, represents a
crucial issue in plant and animal breeding as well as evolutionary biology. Heterosis has …
crucial issue in plant and animal breeding as well as evolutionary biology. Heterosis has …
The genotype–phenotype relationship and evolutionary genetics in the light of the Metabolic Control Analysis
D de Vienne, C Coton, C Dillmann - Biosystems, 2023 - Elsevier
Metabolic control analysis has long been used as a systemic model of the genotype–
phenotype (GP) relationship. By considering kinetic parameters and enzyme concentrations …
phenotype (GP) relationship. By considering kinetic parameters and enzyme concentrations …
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia
O Arnaiz, JF Goût, M Bétermier, K Bouhouche, J Cohen… - BMC genomics, 2010 - Springer
Abstract Background The genome of Paramecium tetraurelia, a unicellular model that
belongs to the ciliate phylum, has been shaped by at least 3 successive whole genome …
belongs to the ciliate phylum, has been shaped by at least 3 successive whole genome …