Computational approaches streamlining drug discovery
AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …
have seen a tectonic shift towards embracing computational technologies in both academia …
Leveraging artificial intelligence in the fight against infectious diseases
Despite advances in molecular biology, genetics, computation, and medicinal chemistry,
infectious disease remains an ominous threat to public health. Addressing the challenges …
infectious disease remains an ominous threat to public health. Addressing the challenges …
Diffdock: Diffusion steps, twists, and turns for molecular docking
Predicting the binding structure of a small molecule ligand to a protein--a task known as
molecular docking--is critical to drug design. Recent deep learning methods that treat …
molecular docking--is critical to drug design. Recent deep learning methods that treat …
Clustering predicted structures at the scale of the known protein universe
Proteins are key to all cellular processes and their structure is important in understanding
their function and evolution. Sequence-based predictions of protein structures have …
their function and evolution. Sequence-based predictions of protein structures have …
Discovery of a structural class of antibiotics with explainable deep learning
The discovery of novel structural classes of antibiotics is urgently needed to address the
ongoing antibiotic resistance crisis,,,,,,,–. Deep learning approaches have aided in exploring …
ongoing antibiotic resistance crisis,,,,,,,–. Deep learning approaches have aided in exploring …
AlphaFold2 and its applications in the fields of biology and medicine
Z Yang, X Zeng, Y Zhao, R Chen - Signal Transduction and Targeted …, 2023 - nature.com
Abstract AlphaFold2 (AF2) is an artificial intelligence (AI) system developed by DeepMind
that can predict three-dimensional (3D) structures of proteins from amino acid sequences …
that can predict three-dimensional (3D) structures of proteins from amino acid sequences …
[HTML][HTML] Before and after AlphaFold2: An overview of protein structure prediction
LMF Bertoline, AN Lima, JE Krieger… - Frontiers in …, 2023 - frontiersin.org
Three-dimensional protein structure is directly correlated with its function and its
determination is critical to understanding biological processes and addressing human …
determination is critical to understanding biological processes and addressing human …
Discovering small-molecule senolytics with deep neural networks
The accumulation of senescent cells is associated with aging, inflammation and cellular
dysfunction. Senolytic drugs can alleviate age-related comorbidities by selectively killing …
dysfunction. Senolytic drugs can alleviate age-related comorbidities by selectively killing …
[PDF][PDF] How good are AlphaFold models for docking-based virtual screening?
V Scardino, JI Di Filippo, CN Cavasotto - Iscience, 2023 - cell.com
A crucial component in structure-based drug discovery is the availability of high-quality three-
dimensional structures of the protein target. Whenever experimental structures were not …
dimensional structures of the protein target. Whenever experimental structures were not …
How accurately can one predict drug binding modes using AlphaFold models?
Computational prediction of protein structure has been pursued intensely for decades,
motivated largely by the goal of using structural models for drug discovery. Recently …
motivated largely by the goal of using structural models for drug discovery. Recently …