Optical tweezers—from calibration to applications: a tutorial
Since their invention in 1986 by Arthur Ashkin and colleagues, optical tweezers have
become an essential tool in several fields of physics, spectroscopy, biology …
become an essential tool in several fields of physics, spectroscopy, biology …
Recent developments in Kramers' theory of reaction rates
E Pollak, S Miret‐Artés - ChemPhysChem, 2023 - Wiley Online Library
In this short review, we provide an update of recent developments in Kramers' theory of
reaction rates. After a brief introduction stressing the importance of this theory initially …
reaction rates. After a brief introduction stressing the importance of this theory initially …
Fast protein folding is governed by memory-dependent friction
When described by a low-dimensional reaction coordinate, the folding rates of most proteins
are determined by a subtle interplay between free-energy barriers, which separate folded …
are determined by a subtle interplay between free-energy barriers, which separate folded …
Quantifying the properties of nonproductive attempts at thermally activated energy-barrier crossing through direct observation
A Lyons, A Devi, NQ Hoffer, MT Woodside - Physical Review X, 2024 - APS
Thermally activated energy-barrier crossing is ubiquitous in physical, chemical, and
biological processes. Most barrier-crossing attempts have insufficient energy to overcome …
biological processes. Most barrier-crossing attempts have insufficient energy to overcome …
Escape dynamics of active particles in multistable potentials
A Militaru, M Innerbichler, M Frimmer… - Nature …, 2021 - nature.com
Rare transitions between long-lived metastable states underlie a great variety of physical,
chemical and biological processes. Our quantitative understanding of reactive mechanisms …
chemical and biological processes. Our quantitative understanding of reactive mechanisms …
The effect of time resolution on apparent transition path times observed in single-molecule studies of biomolecules
DE Makarov, A Berezhkovskii, G Haran… - The Journal of Physical …, 2022 - ACS Publications
Single-molecule experiments have now achieved a time resolution allowing observation of
transition paths, the brief trajectory segments where the molecule undergoing an unfolding …
transition paths, the brief trajectory segments where the molecule undergoing an unfolding …
Emergent memory and kinetic hysteresis in strongly driven networks
Stochastic network dynamics are typically assumed to be memoryless. Involving prolonged
dwells interrupted by instantaneous transitions between nodes, such Markov networks stand …
dwells interrupted by instantaneous transitions between nodes, such Markov networks stand …
[HTML][HTML] The effect of time resolution on the observed first passage times in diffusive dynamics
K Song, DE Makarov, E Vouga - The Journal of Chemical Physics, 2023 - pubs.aip.org
Single-molecule and single-particle tracking experiments are typically unable to resolve fine
details of thermal motion at short timescales where trajectories are continuous. We show …
details of thermal motion at short timescales where trajectories are continuous. We show …
Fluid viscoelasticity triggers fast transitions of a Brownian particle in a double well optical potential
BR Ferrer, JR Gomez-Solano, AV Arzola - Physical Review Letters, 2021 - APS
Thermally activated transitions are ubiquitous in nature, occurring in complex environments
which are typically conceived as ideal viscous fluids. We report the first direct observations …
which are typically conceived as ideal viscous fluids. We report the first direct observations …
Experimental measurement of mean transition path velocities of colloidal particles surmounting energy barriers
BR Ferrer, JR Gomez Solano - New Journal of Physics, 2024 - iopscience.iop.org
Transition paths are rare events occurring when a system, thanks to the effect of fluctuations,
crosses successfully from one stable state to another by surmounting an energy barrier …
crosses successfully from one stable state to another by surmounting an energy barrier …