Optical tweezers—from calibration to applications: a tutorial

J Gieseler, JR Gomez-Solano, A Magazzù… - Advances in Optics …, 2021 - opg.optica.org
Since their invention in 1986 by Arthur Ashkin and colleagues, optical tweezers have
become an essential tool in several fields of physics, spectroscopy, biology …

Recent developments in Kramers' theory of reaction rates

E Pollak, S Miret‐Artés - ChemPhysChem, 2023 - Wiley Online Library
In this short review, we provide an update of recent developments in Kramers' theory of
reaction rates. After a brief introduction stressing the importance of this theory initially …

Fast protein folding is governed by memory-dependent friction

BA Dalton, C Ayaz, H Kiefer, A Klimek… - Proceedings of the …, 2023 - National Acad Sciences
When described by a low-dimensional reaction coordinate, the folding rates of most proteins
are determined by a subtle interplay between free-energy barriers, which separate folded …

Quantifying the properties of nonproductive attempts at thermally activated energy-barrier crossing through direct observation

A Lyons, A Devi, NQ Hoffer, MT Woodside - Physical Review X, 2024 - APS
Thermally activated energy-barrier crossing is ubiquitous in physical, chemical, and
biological processes. Most barrier-crossing attempts have insufficient energy to overcome …

Escape dynamics of active particles in multistable potentials

A Militaru, M Innerbichler, M Frimmer… - Nature …, 2021 - nature.com
Rare transitions between long-lived metastable states underlie a great variety of physical,
chemical and biological processes. Our quantitative understanding of reactive mechanisms …

The effect of time resolution on apparent transition path times observed in single-molecule studies of biomolecules

DE Makarov, A Berezhkovskii, G Haran… - The Journal of Physical …, 2022 - ACS Publications
Single-molecule experiments have now achieved a time resolution allowing observation of
transition paths, the brief trajectory segments where the molecule undergoing an unfolding …

Emergent memory and kinetic hysteresis in strongly driven networks

D Hartich, A Godec - Physical Review X, 2021 - APS
Stochastic network dynamics are typically assumed to be memoryless. Involving prolonged
dwells interrupted by instantaneous transitions between nodes, such Markov networks stand …

[HTML][HTML] The effect of time resolution on the observed first passage times in diffusive dynamics

K Song, DE Makarov, E Vouga - The Journal of Chemical Physics, 2023 - pubs.aip.org
Single-molecule and single-particle tracking experiments are typically unable to resolve fine
details of thermal motion at short timescales where trajectories are continuous. We show …

Fluid viscoelasticity triggers fast transitions of a Brownian particle in a double well optical potential

BR Ferrer, JR Gomez-Solano, AV Arzola - Physical Review Letters, 2021 - APS
Thermally activated transitions are ubiquitous in nature, occurring in complex environments
which are typically conceived as ideal viscous fluids. We report the first direct observations …

Experimental measurement of mean transition path velocities of colloidal particles surmounting energy barriers

BR Ferrer, JR Gomez Solano - New Journal of Physics, 2024 - iopscience.iop.org
Transition paths are rare events occurring when a system, thanks to the effect of fluctuations,
crosses successfully from one stable state to another by surmounting an energy barrier …