Protein digestion: an overview of the available techniques and recent developments

L Switzar, M Giera, WMA Niessen - Journal of proteome research, 2013 - ACS Publications
Several proteomics approaches are available that are defined by the level (protein or
peptide) at which analysis takes place. The most widely applied method still is bottom-up …

Large-scale protein identification using mass spectrometry

D Lin, DL Tabb, JR Yates III - Biochimica et Biophysica Acta (BBA)-Proteins …, 2003 - Elsevier
Recent achievements in genomics have created an infrastructure of biological information.
The enormous success of genomics promptly induced a subsequent explosion in …

Ultrafast enzymatic digestion of proteins by microdroplet mass spectrometry

X Zhong, H Chen, RN Zare - Nature communications, 2020 - nature.com
Enzymatic digestion for protein sequencing usually requires much time, and does not
always result in high sequence coverage. Here we report the use of aqueous microdroplets …

Fast-response proteomics by accelerated in-gel digestion of proteins

J Havliš, H Thomas, M Šebela… - Analytical chemistry, 2003 - ACS Publications
Kinetics of in-gel digestion of proteins by modified and native trypsins was studied by MALDI
TOF mass spectrometry using 18O-labeled peptides as internal standards. The effect of the …

Microdroplet ultrafast reactions speed antibody characterization

P Zhao, HP Gunawardena, X Zhong, RN Zare… - Analytical …, 2021 - ACS Publications
Recently, microdroplet reactions have aroused much interest because the microdroplet
provides a unique medium where organic reactions could be accelerated by a factor of 103 …

Chemical cleavage at aspartyl residues for protein identification

A Li, RC Sowder, LE Henderson, SP Moore… - Analytical …, 2001 - ACS Publications
An alternative method to enzymatic digestion for protein identification by mass spectrometry
has been developed that is based on chemical cleavage by formic acid. This method was …

Investigation of tryptic protein digestion in microdroplets and in bulk solution

Y Ai, J Xu, HP Gunawardena, RN Zare… - Journal of the American …, 2022 - ACS Publications
Recent studies have shown that ultrafast enzymatic digestion of proteins can be achieved in
microdroplet within 250 μs. Further investigation of peptides resulting from microdroplet …

Mass spectrometry-based proteolytic mapping for rapid virus identification

ZP Yao, PA Demirev, C Fenselau - Analytical Chemistry, 2002 - ACS Publications
A novel method is proposed for rapid identification of viruses and other organisms that show
a low number of biomarkers, based on the construction of databases of organism-specific …

Elucidation of glycoprotein structures by unspecific proteolysis and direct nanoESI mass spectrometric analysis of ZIC-HILIC-enriched glycopeptides

K Neue, M Mormann, J Peter-Katalinić… - Journal of proteome …, 2011 - ACS Publications
Protein glycosylation was explored by direct nanoESI MS and MS/MS analysis of ZIC-HILIC-
enriched proteolytic glycopeptides without further separation or purification. In a previous …

Large extent of disorder in Adenomatous Polyposis Coli offers a strategy to guard Wnt signalling against point mutations

DP Minde, M Radli, F Forneris, MM Maurice… - PloS one, 2013 - journals.plos.org
Mutations in the central region of the signalling hub Adenomatous Polyposis Coli (APC)
cause colorectal tumourigenesis. The structure of this region remained unknown. Here, we …