A review of progress in single particle tracking: from methods to biophysical insights

C Manzo, MF Garcia-Parajo - Reports on progress in physics, 2015 - iopscience.iop.org
Optical microscopy has for centuries been a key tool to study living cells with minimum
invasiveness. The advent of single molecule techniques over the past two decades has …

How it feels in a cell

M Bonucci, T Shu, LJ Holt - Trends in Cell Biology, 2023 - cell.com
Life emerges from thousands of biochemical processes occurring within a shared
intracellular environment. We have gained deep insights from in vitro reconstitution of …

Spatiotemporal control of liquid crystal structure and dynamics through activity patterning

R Zhang, SA Redford, PV Ruijgrok, N Kumar… - Nature materials, 2021 - nature.com
Active materials are capable of converting free energy into mechanical work to produce
autonomous motion, and exhibit striking collective dynamics that biology relies on for …

F-actin architecture determines constraints on myosin thick filament motion

CG Muresan, ZG Sun, V Yadav, AP Tabatabai… - Nature …, 2022 - nature.com
Active stresses are generated and transmitted throughout diverse F-actin architectures
within the cell cytoskeleton, and drive essential behaviors of the cell, from cell division to …

Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus

I Izeddin, V Récamier, L Bosanac, II Cissé… - Elife, 2014 - elifesciences.org
Gene regulation relies on transcription factors (TFs) exploring the nucleus searching their
targets. So far, most studies have focused on how fast TFs diffuse, underestimating the role …

Advances in the microrheology of complex fluids

TA Waigh - Reports on Progress in Physics, 2016 - iopscience.iop.org
New developments in the microrheology of complex fluids are considered. Firstly the
requirements for a simple modern particle tracking microrheology experiment are …

Classification of diffusion modes in single-particle tracking data: Feature-based versus deep-learning approach

P Kowalek, H Loch-Olszewska, J Szwabiński - Physical Review E, 2019 - APS
Single-particle trajectories measured in microscopy experiments contain important
information about dynamic processes occurring in a range of materials including living cells …

Guided nuclear exploration increases CTCF target search efficiency

AS Hansen, A Amitai, C Cattoglio, R Tjian… - Nature chemical …, 2020 - nature.com
The enormous size of mammalian genomes means that for a DNA-binding protein the
number of nonspecific, off-target sites vastly exceeds the number of specific, cognate sites …

Chromatin mobility and relocation in DNA repair

N Lamm, S Rogers, AJ Cesare - Trends in cell biology, 2021 - cell.com
The nucleus is a dynamic environment containing chromatin, membraneless organelles,
and specialized molecular structures at the nuclear membrane. Within the spectrum of DNA …

Fundamental trade-offs between information flow in single cells and cellular populations

R Suderman, JA Bachman, A Smith… - Proceedings of the …, 2017 - National Acad Sciences
Signal transduction networks allow eukaryotic cells to make decisions based on information
about intracellular state and the environment. Biochemical noise significantly diminishes the …