Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenotyping strategies are necessary to empower high-
resolution linkage mapping and genome-wide association studies and for training genomic …

Transcriptional control of fleshy fruit development and ripening

R Karlova, N Chapman, K David… - Journal of …, 2014 - academic.oup.com
Fleshy fruits have evolved to be attractive to frugivores in order to enhance seed dispersal,
and have become an indispensable part of the human diet. Here we review the recent …

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

N Fernandez-Pozo, N Menda, JD Edwards… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Sol Genomics Network (SGN, http://solgenomics. net) is a web portal with
genomic and phenotypic data, and analysis tools for the Solanaceae family and close …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

R Caspi, T Altman, R Billington, K Dreher… - Nucleic acids …, 2014 - academic.oup.com
Abstract The MetaCyc database (MetaCyc. org) is a comprehensive and freely accessible
database describing metabolic pathways and enzymes from all domains of life. MetaCyc …

Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants

P Schläpfer, P Zhang, C Wang, T Kim, M Banf… - Plant …, 2017 - academic.oup.com
Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

Phytozome: a comparative platform for green plant genomics

DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

A Bombarely, HG Rosli, J Vrebalov… - Molecular Plant …, 2012 - Am Phytopath Society
Nicotiana benthamiana is a widely used model plant species for the study of fundamental
questions in molecular plant-microbe interactions and other areas of plant biology. This …

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

R Caspi, T Altman, K Dreher, CA Fulcher… - Nucleic acids …, 2012 - academic.oup.com
Abstract The MetaCyc database (http://metacyc. org/) provides a comprehensive and freely
accessible resource for metabolic pathways and enzymes from all domains of life. The …

[HTML][HTML] Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum

S Huang, Y Gao, J Liu, X Peng, X Niu, Z Fei… - Molecular Genetics and …, 2012 - Springer
The WRKY transcription factors have been implicated in multiple biological processes in
plants, especially in regulating defense against biotic and abiotic stresses. However, little …

The Tomato Yellow Leaf Curl Virus Resistance Genes Ty-1 and Ty-3 Are Allelic and Code for DFDGD-Class RNA–Dependent RNA Polymerases

MG Verlaan, SF Hutton, RM Ibrahem, R Kormelink… - PLoS …, 2013 - journals.plos.org
Tomato Yellow Leaf Curl Virus Disease incited by Tomato yellow leaf curl virus (TYLCV)
causes huge losses in tomato production worldwide and is caused by different related …