Next-generation physiology approaches to study microbiome function at single cell level
The function of cells in their native habitat often cannot be reliably predicted from genomic
data or from physiology studies of isolates. Traditional experimental approaches to study the …
data or from physiology studies of isolates. Traditional experimental approaches to study the …
Growth rates of microbes in the oceans
DL Kirchman - Annual review of marine science, 2016 - annualreviews.org
A microbe's growth rate helps to set its ecological success and its contribution to food web
dynamics and biogeochemical processes. Growth rates at the community level are …
dynamics and biogeochemical processes. Growth rates at the community level are …
The mammalian midbody and midbody remnant are assembly sites for RNA and localized translation
S Park, R Dahn, E Kurt, A Presle, K VanDenHeuvel… - Developmental cell, 2023 - cell.com
Long ignored as a vestigial remnant of cytokinesis, the mammalian midbody (MB) is
released post-abscission inside large extracellular vesicles called MB remnants (MBRs) …
released post-abscission inside large extracellular vesicles called MB remnants (MBRs) …
Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum
Bacterial remineralization of algal organic matter fuels algal growth but is rarely quantified.
Consequently, we cannot currently predict whether some bacterial taxa may provide more …
Consequently, we cannot currently predict whether some bacterial taxa may provide more …
Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria
S Smriga, VI Fernandez, JG Mitchell… - Proceedings of the …, 2016 - National Acad Sciences
The microenvironment surrounding individual phytoplankton cells is often rich in dissolved
organic matter (DOM), which can attract bacteria by chemotaxis. These “phycospheres” may …
organic matter (DOM), which can attract bacteria by chemotaxis. These “phycospheres” may …
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia
R Hatzenpichler, SA Connon… - Proceedings of the …, 2016 - National Acad Sciences
To understand the biogeochemical roles of microorganisms in the environment, it is
important to determine when and under which conditions they are metabolically active …
important to determine when and under which conditions they are metabolically active …
Temporal patterns of rarity provide a more complete view of microbial diversity
A Shade, JA Gilbert - Trends in microbiology, 2015 - cell.com
Recently, conditionally rare taxa (CRTs)–those taxa that are typically in very low abundance
but occasionally achieve prevalence–were shown to contribute to patterns of microbial …
but occasionally achieve prevalence–were shown to contribute to patterns of microbial …
Activity-based cell sorting reveals responses of uncultured archaea and bacteria to substrate amendment
Metagenomic studies have revolutionized our understanding of the metabolic potential of
uncultured microorganisms in various ecosystems. However, many of these genomic …
uncultured microorganisms in various ecosystems. However, many of these genomic …
Vertically distinct microbial communities in the Mariana and Kermadec trenches
LM Peoples, S Donaldson, O Osuntokun, Q Xia… - Plos one, 2018 - journals.plos.org
Hadal trenches, oceanic locations deeper than 6,000 m, are thought to have distinct
microbial communities compared to those at shallower depths due to high hydrostatic …
microbial communities compared to those at shallower depths due to high hydrostatic …
Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter
Blooms of gelatinous zooplankton, an important source of protein-rich biomass in coastal
waters, often collapse rapidly, releasing large amounts of labile detrital organic matter (OM) …
waters, often collapse rapidly, releasing large amounts of labile detrital organic matter (OM) …