Recent advances in biological single-molecule applications of optical tweezers and fluorescence microscopy

MH Shabestari, AEC Meijering, WH Roos… - Methods in …, 2017 - Elsevier
Over the past two decades, single-molecule techniques have evolved into robust tools to
study many fundamental biological processes. The combination of optical tweezers with …

[HTML][HTML] Condensation goes viral: a polymer physics perspective

JJ Alston, A Soranno - Journal of molecular biology, 2023 - Elsevier
The past decade has seen a revolution in our understanding of how the cellular environment
is organized, where an incredible body of work has provided new insights into the role …

Electrostatic interactions in biological DNA-related systems

AG Cherstvy - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
In this perspective article, we focus on recent developments in the theory of charge effects in
biological DNA-related systems. The electrostatic effects on different levels of DNA …

Single-molecular dissection of liquid–liquid phase transitions

P Pokhrel, S Jonchhe, W Pan… - Journal of the American …, 2023 - ACS Publications
Interaction between peptides and nucleic acids is a ubiquitous process that drives many
cellular functions, such as replications, transcriptions, and translations. Recently, this …

Experimental study of a nanoscale translocation ratchet

B Molcrette, L Chazot-Franguiadakis… - Proceedings of the …, 2022 - National Acad Sciences
Despite an extensive theoretical and numerical background, the translocation ratchet
mechanism, which is fundamental for the transmembrane transport of biomolecules, has …

Polymeric Toroids Derived from the Fusion-Induced Particle Assembly of Anisotropic Bowl-Shaped Nanoparticles

X Zhou, C Gao, Y Gao, Y Fan, H Sun - ACS Macro Letters, 2023 - ACS Publications
Polymeric toroids are fascinating soft nanostructures due to their unique geometry and
properties, which have shown potential applications in the fields of nanoreactors, drug …

HIV-1 nucleocapsid protein binds double-stranded DNA in multiple modes to regulate compaction and capsid uncoating

H Gien, M Morse, MJ McCauley, JP Kitzrow… - Viruses, 2022 - mdpi.com
The HIV-1 nucleocapsid protein (NC) is a multi-functional protein necessary for viral
replication. Recent studies have demonstrated reverse transcription occurs inside the fully …

Protamine loops DNA in multiple steps

OA Ukogu, AD Smith, LM Devenica… - Nucleic Acids …, 2020 - academic.oup.com
Protamine proteins dramatically condense DNA in sperm to almost crystalline packing
levels. Here, we measure the first step in the in vitro pathway, the folding of DNA into a …

Protamine folds DNA into flowers and loop stacks

RB McMillan, H Bediako, LM Devenica, A Velasquez… - Biophysical journal, 2023 - cell.com
DNA in sperm undergoes an extreme compaction to almost crystalline packing levels. To
produce this dense packing, DNA is dramatically reorganized in minutes by protamine …

Nanostructure-induced DNA condensation

T Zhou, A Llizo, C Wang, G Xu, Y Yang - Nanoscale, 2013 - pubs.rsc.org
The control of the DNA condensation process is essential for compaction of DNA in
chromatin, as well as for biological applications such as nonviral gene therapy. This review …