Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome

BP Sahu, P Majee, RR Singh, A Sahoo, D Nayak - Scientific reports, 2020 - nature.com
Genome-wide in-silico identification of microsatellites or simple sequence repeats (SSRs) in
the Orf virus (ORFV), the causative agent of contagious ecthyma has been carried out to …

Comparison of the microsatellite distribution patterns in the genomes of euarchontoglires at the taxonomic level

X Song, T Yang, X Zhang, Y Yuan, X Yan, Y Wei… - Frontiers in …, 2021 - frontiersin.org
Microsatellite or simple sequence repeat (SSR) instability within genes can induce genetic
variation. The SSR signatures remain largely unknown in different clades within …

[HTML][HTML] Potential linkage between compound microsatellites and recombination in geminiviruses: evidence from comparative analysis

B George, CM Alam, RV Kumar, P Gnanasekaran… - Virology, 2015 - Elsevier
The compound microsatellites consist of two or more individual microsatellites, originate
from mutation or imperfection in simple repeat sequences. The reports on systematic …

Pin1 liberates the human immunodeficiency virus type-1 (HIV-1): Must we stop it?

H Hou, JZ Wang, BG Liu, T Zhang - Gene, 2015 - Elsevier
Acquired immune deficiency syndrome (AIDS) is mainly caused by the human
immunodeficiency virus type-1 (HIV-1). To our knowledge, this is the first review focusing on …

Molecular genetic analysis and evolution of begomoviruses and betasatellites causing yellow mosaic disease of bhendi

RV Kumar, HC Prasanna, AK Singh, D Ragunathan… - Virus Genes, 2017 - Springer
Abstract In India, Bhendi yellow vein mosaic disease (BYVMD) is one of the most
economically important diseases of bhendi/okra and is caused by a complex of monopartite …

Genome-wide scan for analysis of simple and imperfect microsatellites in diverse carlaviruses

CM Alam, AK Singh, C Sharfuddin, S Ali - Infection, Genetics and Evolution, 2014 - Elsevier
An exhaustive compilation and analysis of incidence, distribution and variation of simple
sequence repeats (SSRs) in viruses are required to understand the evolution and functional …

Molecular characterization and recombination analysis of an Indian isolate of Onion yellow dwarf virus

RK Verma, R Mishra, NM Petrov, M Stoyanova… - European journal of …, 2015 - Springer
This study presents the first whole genome sequence of O nion yellow dwarf virus (OYDV
isolate RR1) from onion (Allium cepa) in India along with phylogenetic and recombination …

In-silico analysis of simple and imperfect microsatellites in diverse tobamovirus genomes

CM Alam, AK Singh, C Sharfuddin, S Ali - Gene, 2013 - Elsevier
An in-silico analysis of simple sequence repeats (SSRs) in 30 species of tobamoviruses was
done. SSRs (mono to hexa) were present with variant frequency across species. Compound …

The analysis of microsatellites and compound microsatellites in 56 complete genomes of Herpesvirales

X Wu, L Zhou, X Zhao, Z Tan - Gene, 2014 - Elsevier
Simple sequence repeats (SSRs), or microsatellites, are special DNA/RNA sequences with
repeated unit of 1–6 bp. The genomes of Herpesvirales have many repeating structures …

[HTML][HTML] Analysis of simple and imperfect microsatellites in Ebolavirus species and other genomes of Filoviridae family

CM Alam, C Sharfuddin, S Ali - Gene, Cell and Tissue, 2015 - brieflands.com
Background: Microsatellites have evoked the interest of researchers owing to their
applications in different fields such as DNA fingerprinting, genetic mapping, population …