[HTML][HTML] lincRNAs: genomics, evolution, and mechanisms

I Ulitsky, DP Bartel - Cell, 2013 - cell.com
Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in
mammalian genomes and might play widespread roles in gene regulation and other cellular …

Topology of mammalian developmental enhancers and their regulatory landscapes

W De Laat, D Duboule - Nature, 2013 - nature.com
How a complex animal can arise from a fertilized egg is one of the oldest and most
fascinating questions of biology, the answer to which is encoded in the genome. Body shape …

Evolutionary constraint and innovation across hundreds of placental mammals

MJ Christmas, IM Kaplow, DP Genereux, MX Dong… - Science, 2023 - science.org
Zoonomia is the largest comparative genomics resource for mammals produced to date. By
aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect …

[HTML][HTML] A cross-disorder dosage sensitivity map of the human genome

RL Collins, JT Glessner, E Porcu, M Lepamets… - Cell, 2022 - cell.com
Rare copy-number variants (rCNVs) include deletions and duplications that occur
infrequently in the global human population and can confer substantial risk for disease. In …

Functional and topological characteristics of mammalian regulatory domains

O Symmons, VV Uslu, T Tsujimura, S Ruf… - Genome …, 2014 - genome.cshlp.org
Long-range regulatory interactions play an important role in shaping gene-expression
programs. However, the genomic features that organize these activities are still poorly …

[HTML][HTML] Long non-coding RNAs as a source of new peptides

J Ruiz-Orera, X Messeguer, JA Subirana, MM Alba - elife, 2014 - elifesciences.org
Deep transcriptome sequencing has revealed the existence of many transcripts that lack
long or conserved open reading frames (ORFs) and which have been termed long non …

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel, G Bejerano, JS Pedersen… - Genome …, 2005 - genome.cshlp.org
We have conducted a comprehensive search for conserved elements in vertebrate
genomes, using genome-wide multiple alignments of five vertebrate species (human …

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

L Guelen, L Pagie, E Brasset, W Meuleman, MB Faza… - Nature, 2008 - nature.com
The architecture of human chromosomes in interphase nuclei is still largely unknown.
Microscopy studies have indicated that specific regions of chromosomes are located in close …

Genome sequence, comparative analysis and haplotype structure of the domestic dog

K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson… - Nature, 2005 - nature.com
Here we report a high-quality draft genome sequence of the domestic dog (Canis familiaris),
together with a dense map of single nucleotide polymorphisms (SNPs) across breeds. The …

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Project management: Fulton Lucinda A. 1 Mardis … - Nature, 2004 - nature.com
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the
chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to …