ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi… - Genome …, 2017 - genome.cshlp.org
The assembly of DNA sequences de novo is fundamental to genomics research. It is the first
of many steps toward elucidating and characterizing whole genomes. Downstream …
of many steps toward elucidating and characterizing whole genomes. Downstream …
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent
genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied …
genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied …
Phylogenomic analyses of the Tenthredinoidea support the familial rank of Athaliidae (Insecta, Tenthredinoidea)
Simple Summary In the current era of data explosion, the use of genetic information is
increasingly being applied across numerous biological questions. One application has been …
increasingly being applied across numerous biological questions. One application has been …
Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description
High‐throughput sequencing (HTS) is a powerful tool that enables the simultaneous
detection and potential identification of any organisms present in a sample. The growing …
detection and potential identification of any organisms present in a sample. The growing …
Tigmint: correcting assembly errors using linked reads from large molecules
Background Genome sequencing yields the sequence of many short snippets of DNA
(reads) from a genome. Genome assembly attempts to reconstruct the original genome from …
(reads) from a genome. Genome assembly attempts to reconstruct the original genome from …
Molecular mechanisms of mutualistic and antagonistic interactions in a plant–pollinator association
Many insects metamorphose from antagonistic larvae into mutualistic adult pollinators, with
reciprocal adaptation leading to specialized insect–plant associations. It remains unknown …
reciprocal adaptation leading to specialized insect–plant associations. It remains unknown …
Convergent consequences of parthenogenesis on stick insect genomes
The shift from sexual reproduction to parthenogenesis has occurred repeatedly in animals,
but how the loss of sex affects genome evolution remains poorly understood. We generated …
but how the loss of sex affects genome evolution remains poorly understood. We generated …
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki
For any genome-based research, a robust genome assembly is required. De novo assembly
strategies have evolved with changes in DNA sequencing technologies and have been …
strategies have evolved with changes in DNA sequencing technologies and have been …
Dog10K_Boxer_Tasha_1. 0: a long-read assembly of the dog reference genome
The domestic dog has evolved to be an important biomedical model for studies regarding
the genetic basis of disease, morphology and behavior. Genetic studies in the dog have …
the genetic basis of disease, morphology and behavior. Genetic studies in the dog have …
Genomic evidence of neo-sex chromosomes in the eastern yellow robin
HM Gan, S Falk, HE Morales, CM Austin… - …, 2019 - academic.oup.com
Background Understanding sex-biased natural selection can be enhanced by access to well-
annotated chromosomes including ones inherited in sex-specific fashion. The eastern …
annotated chromosomes including ones inherited in sex-specific fashion. The eastern …