Computational bioacoustics with deep learning: a review and roadmap

D Stowell - PeerJ, 2022 - peerj.com
Animal vocalisations and natural soundscapes are fascinating objects of study, and contain
valuable evidence about animal behaviours, populations and ecosystems. They are studied …

Finding, visualizing, and quantifying latent structure across diverse animal vocal repertoires

T Sainburg, M Thielk, TQ Gentner - PLoS computational biology, 2020 - journals.plos.org
Animals produce vocalizations that range in complexity from a single repeated call to
hundreds of unique vocal elements patterned in sequences unfolding over hours …

The potential for acoustic individual identification in mammals

P Linhart, M Mahamoud-Issa, D Stowell… - Mammalian Biology, 2022 - Springer
Many studies have revealed that animal vocalizations, including those from mammals, are
individually distinctive. Therefore, acoustic identification of individuals (AIID) has been …

Automated annotation of birdsong with a neural network that segments spectrograms

Y Cohen, DA Nicholson, A Sanchioni, EK Mallaber… - Elife, 2022 - elifesciences.org
Songbirds provide a powerful model system for studying sensory-motor learning. However,
many analyses of birdsong require time-consuming, manual annotation of its elements …

Fast and accurate annotation of acoustic signals with deep neural networks

E Steinfath, A Palacios-Muñoz, JR Rottschäfer… - Elife, 2021 - elifesciences.org
Acoustic signals serve communication within and across species throughout the animal
kingdom. Studying the genetics, evolution, and neurobiology of acoustic communication …

Latent space visualization, characterization, and generation of diverse vocal communication signals

T Sainburg, M Thielk, TQ Gentner - BioRxiv, 2019 - biorxiv.org
Animals produce vocalizations that range in complexity from a single repeated call to
hundreds of unique vocal elements patterned in sequences unfolding over hours …

Recent advances at the interface of neuroscience and artificial neural networks

Y Cohen, TA Engel, C Langdon… - Journal of …, 2022 - Soc Neuroscience
Biological neural networks adapt and learn in diverse behavioral contexts. Artificial neural
networks (ANNs) have exploited biological properties to solve complex problems. However …

Syllable clustering analysis-based passive acoustic monitoring technology and its application in bird monitoring

K Wu, W Ruan, D Zhou, Q Chen, C Zhang… - Biodiversity …, 2023 - biodiversity-science.net
Aims: Passive acoustic monitoring has proven to be an effective method for monitoring bird
biodiversity, as it allows for the analysis of important information such as bird songs and …

The impacts of fine-tuning, phylogenetic distance, and sample size on big-data bioacoustics

KL Provost, J Yang, BC Carstens - Plos one, 2022 - journals.plos.org
Vocalizations in animals, particularly birds, are critically important behaviors that influence
their reproductive fitness. While recordings of bioacoustic data have been captured and …

SongExplorer: A deep learning workflow for discovery and segmentation of animal acoustic communication signals

BJ Arthur, Y Ding, M Sosale, F Khalif, E Kim, P Waddell… - bioRxiv, 2021 - biorxiv.org
Many animals produce distinct sounds or substrate-borne vibrations, but these signals have
proved challenging to segment with automated algorithms. We have developed …