Data based identification and prediction of nonlinear and complex dynamical systems

WX Wang, YC Lai, C Grebogi - Physics Reports, 2016 - Elsevier
The problem of reconstructing nonlinear and complex dynamical systems from measured
data or time series is central to many scientific disciplines including physical, biological …

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

AC Oates, LG Morelli, S Ares - Development, 2012 - journals.biologists.com
The segmentation clock is an oscillating genetic network thought to govern the rhythmic and
sequential subdivision of the elongating body axis of the vertebrate embryo into somites: the …

Non-genetic heterogeneity of cells in development: more than just noise

S Huang - Development, 2009 - journals.biologists.com
Cell-to-cell variability of gene expression in clonal populations of mammalian cells is
ubiquitous. However, because molecular biologists habitually assume uniformity of the cell …

[HTML][HTML] Apical constriction: a cell shape change that can drive morphogenesis

JM Sawyer, JR Harrell, G Shemer… - Developmental …, 2010 - Elsevier
Biologists have long recognized that dramatic bending of a cell sheet may be driven by even
modest shrinking of the apical sides of cells. Cell shape changes and tissue movements like …

Interdisciplinary Applied Mathematics

SSAJE Marsden, LSS Wiggins, L Glass, RV Kohn… - 2002 - Springer
The theory of branching processes is an area of mathematics that describes situations in
which an entity exists for a time and then may be replaced by one, two, or more entities of a …

Measuring forces and stresses in situ in living tissues

K Sugimura, PF Lenne, F Graner - Development, 2016 - journals.biologists.com
Development, homeostasis and regeneration of tissues result from a complex combination
of genetics and mechanics, and progresses in the former have been quicker than in the …

Towards a unifying, systems biology understanding of large-scale cellular death and destruction caused by poorly liganded iron: Parkinson's, Huntington's …

DB Kell - Archives of toxicology, 2010 - Springer
Exposure to a variety of toxins and/or infectious agents leads to disease, degeneration and
death, often characterised by circumstances in which cells or tissues do not merely die and …

Emergent complexity of the cytoskeleton: from single filaments to tissue

F Huber, J Schnauß, S Rönicke, P Rauch… - Advances in …, 2013 - Taylor & Francis
Despite their overwhelming complexity, living cells display a high degree of internal
mechanical and functional organization which can largely be attributed to the intracellular …

Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos

J Stegmaier, F Amat, WC Lemon, K McDole, Y Wan… - Developmental cell, 2016 - cell.com
We present the Real-time Accurate Cell-shape Extractor (RACE), a high-throughput image
analysis framework for automated three-dimensional cell segmentation in large-scale …

Boundary formation and maintenance in tissue development

C Dahmann, AC Oates, M Brand - Nature Reviews Genetics, 2011 - nature.com
The formation and maintenance of boundaries between neighbouring groups of embryonic
cells is vital for development because groups of cells with distinct functions must often be …