A survey of open questions in adaptive therapy: Bridging mathematics and clinical translation

J West, F Adler, J Gallaher, M Strobl, R Brady-Nicholls… - Elife, 2023 - elifesciences.org
Adaptive therapy is a dynamic cancer treatment protocol that updates (or 'adapts') treatment
decisions in anticipation of evolving tumor dynamics. This broad term encompasses many …

Parameter estimation using metaheuristics in systems biology: a comprehensive review

J Sun, JM Garibaldi, C Hodgman - IEEE/ACM transactions on …, 2011 - ieeexplore.ieee.org
This paper gives a comprehensive review of the application of metaheuristics to optimization
problems in systems biology, mainly focusing on the parameter estimation problem (also …

[图书][B] Uncertainty quantification: theory, implementation, and applications

RC Smith - 2024 - SIAM
Uncertainty quantification serves a central role for simulation-based analysis of physical,
engineering, and biological applications using mechanistic models. From a broad …

[图书][B] Mathematical models in population biology and epidemiology

F Brauer, C Castillo-Chavez, C Castillo-Chavez - 2012 - Springer
Up to now in our study of continuous population models we have been assuming that x (t),
the growth rate of population size at time t, depends only on x (t), the population size at the …

[图书][B] Smart material systems: model development

RC Smith - 2005 - SIAM
Writing a book on smart materials bears a certain semblance to purchasing a high-end
laptop—due to rapid advances in the field, it is tempting to postpone the decision every six …

[图书][B] Modeling and inverse problems in the presence of uncertainty

HT Banks, S Hu, WC Thompson - 2014 - books.google.com
Modeling and Inverse Problems in the Presence of Uncertainty collects recent research—
including the authors' own substantial projects—on uncertainty propagation and …

Prostate-specific antigen dynamics predict individual responses to intermittent androgen deprivation

R Brady-Nicholls, JD Nagy, TA Gerke, T Zhang… - Nature …, 2020 - nature.com
Intermittent androgen deprivation therapy (IADT) is an attractive treatment for biochemically
recurrent prostate cancer (PCa), whereby cycling treatment on and off can reduce …

Physiological modeling of isoprene dynamics in exhaled breath

J King, H Koc, K Unterkofler, P Mochalski… - Journal of theoretical …, 2010 - Elsevier
Human breath contains a myriad of endogenous volatile organic compounds (VOCs) which
are reflective of ongoing metabolic or physiological processes. While research into the …

Learning partial differential equations for biological transport models from noisy spatio-temporal data

JH Lagergren, JT Nardini… - … of the Royal …, 2020 - royalsocietypublishing.org
We investigate methods for learning partial differential equation (PDE) models from spatio-
temporal data under biologically realistic levels and forms of noise. Recent progress in …

Ecosystem function in predator–prey food webs—confronting dynamic models with empirical data

A Curtsdotter, HT Banks, JE Banks… - Journal of Animal …, 2019 - Wiley Online Library
Most ecosystem functions and related services involve species interactions across trophic
levels, for example, pollination and biological pest control. Despite this, our understanding of …