Text-mining solutions for biomedical research: enabling integrative biology

D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

The alliance of genome resources: transforming comparative genomics

CJ Bult, PW Sternberg - Mammalian Genome, 2023 - Springer
Comparing genomic and biological characteristics across multiple species is essential to
using model systems to investigate the molecular and cellular mechanisms underlying …

A survey on annotation tools for the biomedical literature

M Neves, U Leser - Briefings in bioinformatics, 2014 - academic.oup.com
New approaches to biomedical text mining crucially depend on the existence of
comprehensive annotated corpora. Such corpora, commonly called gold standards, are …

Biocuration: distilling data into knowledge

International Society for Biocuration - PLoS Biology, 2018 - journals.plos.org
Data, including information generated from them by processing and analysis, are an asset
with measurable value. The assets that biological research funding produces are the data …

Argo: an integrative, interactive, text mining-based workbench supporting curation

R Rak, A Rowley, W Black, S Ananiadou - Database, 2012 - academic.oup.com
Curation of biomedical literature is often supported by the automatic analysis of textual
content that generally involves a sequence of individual processing components. Text …

Text mining for literature review and knowledge discovery in cancer risk assessment and research

A Korhonen, D Ó Séaghdha, I Silins, L Sun, J Högberg… - PloS one, 2012 - journals.plos.org
Research in biomedical text mining is starting to produce technology which can make
information in biomedical literature more accessible for bio-scientists. One of the current …

BioCreative III interactive task: an overview

CN Arighi, PM Roberts, S Agarwal, S Bhattacharya… - BMC …, 2011 - Springer
Abstract Background The BioCreative challenge evaluation is a community-wide effort for
evaluating text mining and information extraction systems applied to the biological domain …

Annotating the biomedical literature for the human variome

K Verspoor, A Jimeno Yepes, L Cavedon… - Database, 2013 - academic.oup.com
This article introduces the Variome Annotation Schema, a schema that aims to capture the
core concepts and relations relevant to cataloguing and interpreting human genetic variation …

A comprehensive review on feature set used for anaphora resolution

K Lata, P Singh, K Dutta - Artificial Intelligence Review, 2021 - Springer
Abstract In linguistics, the Anaphora Resolution (AR) is the method of identifying the
antecedent for anaphora. In simple terms, this is the problem that helps to solve what the …

[HTML][HTML] @ Note: a workbench for biomedical text mining

A Lourenço, R Carreira, S Carneiro, P Maia… - Journal of biomedical …, 2009 - Elsevier
Biomedical Text Mining (BioTM) is providing valuable approaches to the automated curation
of scientific literature. However, most efforts have addressed the benchmarking of new …