Guardians of the mycobacterial genome: A review on DNA repair systems in Mycobacterium tuberculosis

A Singh - Microbiology, 2017 - microbiologyresearch.org
The genomic integrity of Mycobacterium tuberculosis is continuously threatened by the
harsh survival conditions inside host macrophages, due to immune and antibiotic stresses …

Ribonucleotide discrimination by translesion synthesis DNA polymerases

A Vaisman, R Woodgate - Critical reviews in biochemistry and …, 2018 - Taylor & Francis
The well-being of all living organisms relies on the accurate duplication of their genomes.
This is usually achieved by highly elaborate replicase complexes which ensure that this task …

RNA polymerase drives ribonucleotide excision DNA repair in E. coli

Z Hao, M Gowder, S Proshkin, BK Bharati, V Epshtein… - Cell, 2023 - cell.com
Ribonuclease HII (RNaseHII) is the principal enzyme that removes misincorporated
ribonucleoside monophosphates (rNMPs) from genomic DNA. Here, we present structural …

Synthetic lethal mutants in Escherichia coli define pathways necessary for survival with RNase H deficiency

S Das, J Forrest, A Kuzminov - Journal of bacteriology, 2023 - Am Soc Microbiol
Ribonucleotides frequently contaminate DNA and, if not removed, cause genomic instability.
Consequently, all organisms are equipped with RNase H enzymes to remove RNA-DNA …

Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids

FC Lowder, LA Simmons - PLoS genetics, 2023 - journals.plos.org
The current model for Okazaki fragment maturation in bacteria invokes RNA cleavage by
RNase H, followed by strand displacement synthesis and 5′ RNA flap removal by DNA …

Ultraviolet-induced RNA: DNA hybrids interfere with chromosomal DNA synthesis

EA Kouzminova, A Kuzminov - Nucleic acids research, 2021 - academic.oup.com
Ultraviolet (UV) induces pyrimidine dimers (PDs) in DNA and replication-dependent
fragmentation in chromosomes. The rnhAB mutants in Escherichia coli, accumulating R …

RNase HII saves rnhA mutant Escherichia coli from R-loop-associated chromosomal fragmentation

EA Kouzminova, FF Kadyrov, A Kuzminov - Journal of molecular biology, 2017 - Elsevier
The rnhAB mutant Escherichia coli, deficient in two RNase H enzymes that remove both R-
loops and incorporated ribonucleotides (rNs) from DNA, grow slowly, suggesting …

Modified nucleoside triphosphates in bacterial research for in vitro and live-cell applications

A Espinasse, HK Lembke, AA Cao… - RSC chemical biology, 2020 - pubs.rsc.org
Modified nucleoside triphosphates (NTPs) are invaluable tools to probe bacterial enzymatic
mechanisms, develop novel genetic material, and engineer drugs and proteins with new …

Escherichia coli DNA replication: the old model organism still holds many surprises

K Łazowski, R Woodgate… - FEMS Microbiology …, 2024 - academic.oup.com
Research on Escherichia coli DNA replication paved the groundwork for many breakthrough
discoveries with important implications for our understanding of human molecular biology …

Bacillus subtilis PcrA Helicase Removes Trafficking Barriers

M Moreno-del Álamo, B Carrasco, R Torres, JC Alonso - Cells, 2021 - mdpi.com
Bacillus subtilis PcrA interacts with the RNA polymerase and might contribute to mitigate
replication–transcription conflicts (RTCs). We show that PcrA depletion lethality is partially …