Microorganisms in coastal wetland sediments: a review on microbial community structure, functional gene, and environmental potential

S Liang, H Li, H Wu, B Yan, A Song - Frontiers in Microbiology, 2023 - frontiersin.org
Coastal wetlands (CW) are the junction of the terrestrial and marine ecosystems and have
special ecological compositions and functions, which are important for maintaining …

Strategies and tools in illumina and nanopore‐integrated metagenomic analysis of microbiome data

Y Xia, X Li, Z Wu, C Nie, Z Cheng, Y Sun, L Liu… - iMeta, 2023 - Wiley Online Library
Metagenomic strategy serves as the foundation for the ecological exploration of novel
bioresources (eg, industrial enzymes and bioactive molecules) and biohazards (eg …

Conversion of steppe to cropland increases spatial heterogeneity of soil functional genes

J Liu, Y Guo, H Gu, Z Liu, X Hu, Z Yu, Y Li, L Li… - The ISME …, 2023 - academic.oup.com
The microbiome function responses to land use change are important for the long-term
prediction and management of soil ecological functions under human influence. However, it …

Unraveling antibiotic resistomes associated with bacterial and viral communities in intertidal mudflat aquaculture area

M Zhu, Y Li, L Wang, W Zhang, L Niu, T Hu - Journal of Hazardous Materials, 2023 - Elsevier
The extensive use of antibiotics in intertidal mudflat aquaculture area has substantially
increased the dissemination risk of antibiotic resistance genes (ARGs). As hosts of ARGs …

Higher pH is associated with enhanced co‐occurrence network complexity, stability and nutrient cycling functions in the rice rhizosphere microbiome

Y Guo, B Song, A Li, Q Wu, H Huang… - Environmental …, 2022 - Wiley Online Library
The rice rhizosphere microbiota is crucial for crop yields and nutrient use efficiency.
However, little is known about how co‐occurrence patterns, keystone taxa and functional …

Seasonal changes driving shifts of aquatic rhizosphere microbial community structure and the functional properties

J Zhang, Z Ge, Z Ma, D Huang, J Zhang - Journal of Environmental …, 2022 - Elsevier
Ecological floating beds could enable roots to become suspended and this allowed
submerged roots to harbour various types of microbes. But, there was a lack of systematic …

Non-native plant species invasion increases the importance of deterministic processes in fungal community assembly in a coastal wetland

G Ye, J Chen, P Yang, HW Hu, ZY He, D Wang, D Cao… - Microbial Ecology, 2023 - Springer
Fungal communities are essential to the maintenance of soil multifunctionality. Plant
invasion represents a growing challenge for the conservation of soil biodiversity across the …

MinION Nanopore sequencing accelerates progress towards ubiquitous genetics in water research

D Werner, K Acharya, A Blackburn, R Zan, J Plaimart… - Water, 2022 - mdpi.com
In 2014, Oxford Nanopore Technologies (ONT) introduced an affordable and portable
sequencer called MinION. We reviewed emerging applications in water research and …

Soil bacterial community in the multiple cropping system increased grain yield within 40 cultivation years

T Chen, R Hu, Z Zheng, J Yang, H Fan… - Frontiers in Plant …, 2021 - frontiersin.org
The shortage of land resources restricts the sustainable development of agricultural
production. Multiple cropping has been widely used in Southern China, but whether the …

Co-occurrence patterns and environmental factors associated with rapid onset of Microcystis aeruginosa bloom in a tropical coastal lagoon

L Tarafdar, M Mohapatra, PR Muduli, A Kumar… - Journal of …, 2023 - Elsevier
The environmental factors contributing to the Microcystis aeruginosa bloom (hereafter
referred to as Microcystis bloom) are still debatable as they vary with season and …