INfrastructure for a PHAge REference database: identification of large-scale biases in the current collection of cultured phage genomes

R Cook, N Brown, T Redgwell, B Rihtman, M Barnes… - Phage, 2021 - liebertpub.com
Background: With advances in sequencing technology and decreasing costs, the number of
phage genomes that have been sequenced has increased markedly in the past decade …

Systematic exploration of Escherichia coli phage–host interactions with the BASEL phage collection

E Maffei, A Shaidullina, M Burkolter, Y Heyer… - PLoS …, 2021 - journals.plos.org
Bacteriophages, the viruses infecting bacteria, hold great potential for the treatment of
multidrug-resistant bacterial infections and other applications due to their unparalleled …

Analysis of selection methods to develop novel phage therapy cocktails against antimicrobial resistant clinical isolates of bacteria

MEK Haines, FE Hodges, JY Nale, J Mahony… - Frontiers in …, 2021 - frontiersin.org
Antimicrobial resistance (AMR) is a major problem globally. The main bacterial organisms
associated with urinary tract infection (UTI) associated sepsis are E. coli and Klebsiella …

Hybrid assembly of an agricultural slurry virome reveals a diverse and stable community with the potential to alter the metabolism and virulence of veterinary …

R Cook, S Hooton, U Trivedi, L King, CER Dodd… - Microbiome, 2021 - Springer
Background Viruses are the most abundant biological entities on Earth, known to be crucial
components of microbial ecosystems. However, there is little information on the viral …

Still Something to Discover: Novel Insights into Escherichia coli Phage Diversity and Taxonomy

IHE Korf, JP Meier-Kolthoff, EM Adriaenssens… - Viruses, 2019 - mdpi.com
The aim of this study was to gain further insight into the diversity of Escherichia coli phages
followed by enhanced work on taxonomic issues in that field. Therefore, we present the …

Isolation and Characterization of Klebsiella Phages for Phage Therapy

EM Townsend, L Kelly, L Gannon… - Therapy, Applications …, 2021 - liebertpub.com
Introduction: Klebsiella is a clinically important pathogen causing a variety of antimicrobial
resistant infections in both community and nosocomial settings, particularly pneumonia …

From orphan phage to a proposed new family–the diversity of N4-like viruses

J Wittmann, D Turner, AD Millard, P Mahadevan… - Antibiotics, 2020 - mdpi.com
Escherichia phage N4 was isolated in 1966 in Italy and has remained a genomic orphan for
a long time. It encodes an extremely large virion-associated RNA polymerase unique for …

The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies

R Cook, N Brown, B Rihtman… - Microbial …, 2024 - microbiologyresearch.org
Viral metagenomics has fuelled a rapid change in our understanding of global viral diversity
and ecology. Long-read sequencing and hybrid assembly approaches that combine long …

Comparison of CRISPR and marker-based methods for the engineering of phage T7

AM Grigonyte, C Harrison, PR MacDonald… - Viruses, 2020 - mdpi.com
With the recent rise in interest in using lytic bacteriophages as therapeutic agents, there is
an urgent requirement to understand their fundamental biology to enable the engineering of …

Isolation and characterization of vibriophage vB_Vc_SrVc9: an effective agent in preventing Vibrio campbellii infections in brine shrimp nauplii (Artemia franciscana)

CO Lomelí‐Ortega, AJ Martínez‐Sández… - Journal of Applied …, 2021 - academic.oup.com
Aims This study describes the physicochemical and genomic characterization of phage
vB_Vc_SrVc9 and its potential for phage therapy application against a pathogenic Vibrio …